Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6J44_RS01050 Genome accession   NZ_CP069537
Coordinates   193108..193947 (-) Length   279 a.a.
NCBI ID   WP_204086186.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188108..198947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J44_RS01035 (I6J44_01035) pilE 188327..188752 (-) 426 WP_002117055.1 type IV pilin protein Machinery gene
  I6J44_RS01040 (I6J44_01040) pilY2 188749..189231 (-) 483 WP_002116770.1 type IV pilin protein Machinery gene
  I6J44_RS01045 (I6J44_01045) pilY1 189242..193096 (-) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  I6J44_RS01050 (I6J44_01050) pilX 193108..193947 (-) 840 WP_204086186.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6J44_RS01055 (I6J44_01055) pilW 193913..194914 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  I6J44_RS01060 (I6J44_01060) pilV 194914..195474 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  I6J44_RS01065 (I6J44_01065) fimU 195468..195941 (-) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  I6J44_RS01070 (I6J44_01070) ispH 196111..197061 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6J44_RS01075 (I6J44_01075) gmk 197184..197813 (+) 630 WP_002116973.1 guanylate kinase -
  I6J44_RS01080 (I6J44_01080) rpoZ 197886..198164 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6J44_RS01085 (I6J44_01085) - 198203..198358 (+) 156 Protein_202 hypothetical protein -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 29765.68 Da        Isoelectric Point: 7.6929

>NTDB_id=535409 I6J44_RS01050 WP_204086186.1 193108..193947(-) (pilX) [Acinetobacter pittii strain FDAARGOS_1214]
MLYATRWGKVYDPFNHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNP
TTLTNITNVIGAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVV
TQVAVSVPTDAASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTA
LTAKQTLAECLANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=535409 I6J44_RS01050 WP_204086186.1 193108..193947(-) (pilX) [Acinetobacter pittii strain FDAARGOS_1214]
TTGCTCTACGCAACGCGATGGGGGAAAGTCTATGACCCATTTAATCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCT
TATTGTTGTGCTTATTATTTTATTGATTGTTATTTCTGTAGGGGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTGAAAG
TTGCTACCAATAGCCAAGTTAGCCAATTAAATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCT
ACCACCCTAACTAATATTACTAATGTGATTGGTGCCGCGCTGAAAGAGCACGAAAGTAATCCCGGTGCGGAATACAACTT
TTGTTATAAGCCTGTTTCTACAGCAACAAATTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATA
ATGCAGTTGTCGAAGATGGCGGCGTGGCGGGTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTT
ACCCAAGTTGCTGTAAGTGTTCCAACAGATGCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTC
TGAAGGTACGCAACTTCCTAAAAGTATGTTGTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATG
CATCTACCTCTATTGAAACTTTACAAAGAGATTGCTTGAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCA
TTAACGGCTAAACAAACATTGGCGGAGTGTTTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTA
TACCAATAAACTCACTCAAATTACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

91.698

94.982

0.871