Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   I6J29_RS08400 Genome accession   NZ_CP069510
Coordinates   1731085..1731453 (-) Length   122 a.a.
NCBI ID   WP_005707401.1    Uniprot ID   -
Organism   Haemophilus parahaemolyticus strain FDAARGOS_1199     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1726085..1736453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J29_RS08365 (I6J29_08365) - 1727376..1727642 (+) 267 Protein_1614 transposase -
  I6J29_RS08370 (I6J29_08370) - 1727661..1728257 (-) 597 Protein_1615 FkbM family methyltransferase -
  I6J29_RS08375 (I6J29_08375) - 1728212..1728499 (-) 288 WP_005707414.1 hypothetical protein -
  I6J29_RS08380 (I6J29_08380) - 1728777..1729058 (+) 282 WP_115364327.1 helix-turn-helix domain-containing protein -
  I6J29_RS10375 - 1729445..1729849 (+) 405 Protein_1618 IS3 family transposase -
  I6J29_RS08395 (I6J29_08395) asd 1730031..1730921 (-) 891 WP_005707403.1 archaetidylserine decarboxylase -
  I6J29_RS08400 (I6J29_08400) comEA/comE1 1731085..1731453 (-) 369 WP_005707401.1 ComEA family DNA-binding protein Machinery gene
  I6J29_RS08405 (I6J29_08405) - 1731718..1733067 (+) 1350 WP_005707399.1 LysM-like peptidoglycan-binding domain-containing protein -
  I6J29_RS08410 (I6J29_08410) - 1733123..1733536 (+) 414 WP_005707396.1 MliC family protein -
  I6J29_RS08415 (I6J29_08415) waaF 1733570..1734613 (+) 1044 WP_005707402.1 lipopolysaccharide heptosyltransferase II -
  I6J29_RS08420 (I6J29_08420) rfaC 1734613..1735566 (+) 954 WP_005707407.1 lipopolysaccharide heptosyltransferase RfaC -
  I6J29_RS08425 (I6J29_08425) - 1735636..1735950 (-) 315 WP_005707395.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 12782.67 Da        Isoelectric Point: 10.1490

>NTDB_id=535233 I6J29_RS08400 WP_005707401.1 1731085..1731453(-) (comEA/comE1) [Haemophilus parahaemolyticus strain FDAARGOS_1199]
MKKINTFAISLIVGLFSTAVFANEVTTQPTTLSTQPPVVTAPATSTAPVNIQQVTADPNSVNINTASAAEIQDKLVGIGG
KKAQAIVDYRTKNGAFLSIEQLKEVSGIGAATLEKNRSRIVL

Nucleotide


Download         Length: 369 bp        

>NTDB_id=535233 I6J29_RS08400 WP_005707401.1 1731085..1731453(-) (comEA/comE1) [Haemophilus parahaemolyticus strain FDAARGOS_1199]
ATGAAAAAAATCAACACATTTGCAATATCGCTTATCGTTGGCTTATTCTCAACCGCAGTATTTGCCAATGAAGTTACAAC
CCAACCAACAACGCTATCTACACAACCCCCCGTTGTAACTGCACCAGCAACCTCTACAGCACCTGTTAATATTCAGCAGG
TTACTGCAGATCCAAACTCTGTAAACATTAACACTGCGTCAGCCGCAGAAATTCAAGACAAACTCGTTGGGATTGGCGGG
AAAAAAGCCCAAGCTATTGTGGATTATCGTACCAAAAATGGTGCATTCCTAAGTATTGAGCAATTAAAAGAAGTATCTGG
TATTGGAGCGGCGACACTTGAGAAAAACCGCTCACGTATTGTTTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(60-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.377

100

0.574
  comE1/comEA Haemophilus influenzae Rd KW20

47.541

100

0.475
  comEA Acinetobacter baylyi ADP1

36.22

100

0.377