Detailed information NTG0535214

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: I6J29_RS00475
• Genome accession: NZ_CP069510
• Coordinates: 105314..106510 (-)
• Length: 398 a.a.
• NCBI ID: WP_005707359.1
• Uniprot ID: A0AAE6JVR5
• Organism: Haemophilus parahaemolyticus strain FDAARGOS_1199
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 100314..111510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J29_RS00450 (I6J29_00450)	-	100722..100832 (-)	111	Protein_89	OmpW family protein	-
I6J29_RS00455 (I6J29_00455)	clpB	101160..103733 (+)	2574	WP_005707373.1	ATP-dependent chaperone ClpB	-
I6J29_RS00460 (I6J29_00460)	yacG	103843..104028 (-)	186	WP_005707322.1	DNA gyrase inhibitor YacG	-
I6J29_RS00465 (I6J29_00465)	coaE	104016..104642 (-)	627	WP_005707349.1	dephospho-CoA kinase	-
I6J29_RS00470 (I6J29_00470)	-	104663..105307 (-)	645	WP_005707389.1	A24 family peptidase	-
I6J29_RS00475 (I6J29_00475)	pilC	105314..106510 (-)	1197	WP_005707359.1	type II secretion system F family protein	Machinery gene
I6J29_RS00480 (I6J29_00480)	pilB	106503..107888 (-)	1386	WP_005707356.1	GspE/PulE family protein	Machinery gene
I6J29_RS00485 (I6J29_00485)	pilA	107956..108423 (-)	468	WP_005707325.1	pilin	Machinery gene
I6J29_RS00490 (I6J29_00490)	radA	108615..109994 (+)	1380	WP_005707288.1	DNA repair protein RadA	Machinery gene
I6J29_RS00495 (I6J29_00495)	-	110009..110899 (+)	891	WP_039863409.1	ATP-grasp domain-containing protein	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45679.18 Da
• Isoelectric Point: 9.4680

>NTDB_id=535214 I6J29_RS00475 WP_005707359.1 105314..106510(-) (pilC) [Haemophilus parahaemolyticus strain FDAARGOS_1199]
MFKVYEFHWKAVNRFQKKQKGKLLARNQEELEQKLIKKGFQQIKISRNFILPKNPKSEEVTQLISQLALLINAKLPLKQA
LSIILENTQNIKLYLWIEEIIRSVELGYSFSTSLENLNRYLDNQEIQLIKMGEMSGKLGTILENIAKSRSESEKLFSKVK
KIMFYPVMVLVIALTLSIGMLVLIVPKFAELYSAKDKTLPFITEALFFLSNLLIDNYIFILFLFVLSGCFFSFLDKKTTI
IKKFKYYILSNFPVFKNIIGQSRIIYFTQNIALMLNASLRLDLILETFLSNKQADPILQQECQSVLTLIKQGYAFSECLN
TDVFESQTVQMLSVGERSGKLAEMSEYVSQIYKKKLDDQLDILSQLLEPALMVILGGIVGTIIVGLYLPIFDMGSLVE

Nucleotide

• Length: 1197 bp

>NTDB_id=535214 I6J29_RS00475 WP_005707359.1 105314..106510(-) (pilC) [Haemophilus parahaemolyticus strain FDAARGOS_1199]
ATGTTTAAGGTATATGAGTTTCATTGGAAAGCGGTAAATCGTTTTCAGAAAAAACAAAAAGGAAAATTATTAGCTAGAAA
TCAAGAAGAATTAGAACAAAAGCTAATAAAAAAAGGATTCCAACAAATTAAAATTAGTCGGAATTTTATTTTACCTAAAA
ATCCAAAATCGGAAGAGGTGACTCAACTTATTTCTCAACTTGCTTTACTAATTAACGCAAAACTTCCCTTAAAACAAGCG
TTATCAATCATTTTAGAAAATACACAAAATATAAAACTCTATTTATGGATTGAAGAAATAATACGTTCAGTTGAGTTAGG
TTATTCTTTTTCAACATCATTAGAAAATTTAAATCGCTATTTAGATAACCAGGAAATTCAGCTTATCAAAATGGGGGAGA
TGAGTGGAAAATTAGGAACAATACTTGAAAATATAGCTAAATCCAGATCTGAAAGTGAGAAATTATTTTCGAAAGTAAAG
AAGATTATGTTTTATCCTGTAATGGTATTAGTTATTGCTTTAACTCTTTCAATTGGAATGTTAGTACTCATTGTGCCTAA
ATTTGCAGAATTATATAGTGCGAAAGATAAAACATTGCCTTTTATCACTGAAGCACTCTTTTTTCTCTCTAATTTATTAA
TTGATAATTATATATTTATACTTTTTTTATTTGTGCTGAGTGGCTGTTTTTTCTCTTTTTTAGATAAAAAAACAACAATA
ATTAAAAAGTTTAAATACTATATTTTAAGTAATTTTCCTGTGTTTAAAAATATCATAGGTCAATCCCGTATTATTTATTT
CACTCAAAATATAGCCTTAATGTTAAATGCTAGCCTTCGATTAGATCTTATTTTAGAAACTTTTCTATCAAATAAACAGG
CAGATCCCATTTTACAACAAGAGTGTCAGTCGGTATTAACACTGATTAAACAAGGTTACGCTTTTTCCGAGTGTTTAAAT
ACAGATGTATTTGAAAGCCAAACTGTACAGATGTTATCTGTTGGTGAAAGAAGCGGAAAATTGGCTGAAATGAGTGAATA
TGTTAGCCAAATCTATAAAAAGAAATTAGATGATCAGCTTGATATTCTATCGCAGTTGCTTGAACCTGCATTAATGGTGA
TTCTTGGTGGTATTGTTGGCACTATTATTGTTGGGCTTTATTTACCTATTTTTGATATGGGATCTTTAGTTGAATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (64-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	51.759	100	0.518
pilC	Haemophilus influenzae Rd KW20	40.399	100	0.407
pilC	Haemophilus influenzae 86-028NP	39.9	100	0.402