Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LGS58_RS18760 Genome accession   NZ_CP084683
Coordinates   3890186..3890923 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain BL21(RP)     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3885186..3895923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGS58_RS18730 (LGS58_18730) yfiL 3885345..3885710 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  LGS58_RS18735 (LGS58_18735) aroF 3885920..3886990 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LGS58_RS18740 (LGS58_18740) tyrA 3887001..3888122 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LGS58_RS18745 (LGS58_18745) pheA 3888165..3889325 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  LGS58_RS18750 (LGS58_18750) pheL 3889423..3889470 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LGS58_RS18755 (LGS58_18755) raiA 3889574..3889915 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LGS58_RS18760 (LGS58_18760) comL 3890186..3890923 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LGS58_RS18765 (LGS58_18765) rluD 3891058..3892038 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LGS58_RS18770 (LGS58_18770) yfiH 3892035..3892766 (+) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  LGS58_RS18775 (LGS58_18775) clpC 3892896..3895469 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=535154 LGS58_RS18760 WP_000197686.1 3890186..3890923(-) (comL) [Escherichia coli strain BL21(RP)]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=535154 LGS58_RS18760 WP_000197686.1 3890186..3890923(-) (comL) [Escherichia coli strain BL21(RP)]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376