Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6J47_RS10380 Genome accession   NZ_CP069496
Coordinates   2136679..2137083 (-) Length   134 a.a.
NCBI ID   WP_204086935.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1217     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2131679..2142083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J47_RS10350 (I6J47_10350) - 2131763..2132032 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  I6J47_RS10355 (I6J47_10355) rapZ 2132029..2132880 (-) 852 WP_002117179.1 RNase adapter RapZ -
  I6J47_RS10360 (I6J47_10360) panC 2132904..2133752 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  I6J47_RS10365 (I6J47_10365) panB 2133756..2134565 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I6J47_RS10370 (I6J47_10370) folK 2134611..2135093 (-) 483 WP_002117282.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6J47_RS10375 (I6J47_10375) pcnB 2135090..2136553 (-) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  I6J47_RS10380 (I6J47_10380) comEA 2136679..2137083 (-) 405 WP_204086935.1 ComEA family DNA-binding protein Machinery gene
  I6J47_RS10385 (I6J47_10385) mazG 2137052..2137858 (-) 807 WP_002117253.1 nucleoside triphosphate pyrophosphohydrolase -
  I6J47_RS10390 (I6J47_10390) - 2137971..2138744 (+) 774 WP_002117159.1 SDR family oxidoreductase -
  I6J47_RS10395 (I6J47_10395) relA 2138791..2141097 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15410.61 Da        Isoelectric Point: 10.4113

>NTDB_id=535077 I6J47_RS10380 WP_204086935.1 2136679..2137083(-) (comEA) [Acinetobacter pittii strain FDAARGOS_1217]
MQLSMNLWKNKHNIFIVLFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQQASHSNSPNSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=535077 I6J47_RS10380 WP_204086935.1 2136679..2137083(-) (comEA) [Acinetobacter pittii strain FDAARGOS_1217]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAACATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACAAGCCTCTCATTCTAATAGTCCAAATAGCTCAGTTATGACTGATTCGTCAGGGCAAATACACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

41.129

92.537

0.381