Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   LFW28_RS16935 Genome accession   NZ_CP084529
Coordinates   3555124..3555783 (-) Length   219 a.a.
NCBI ID   WP_001221495.1    Uniprot ID   P52076
Organism   Escherichia coli strain Origami2-DE3     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3550124..3560783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFW28_RS16910 (LFW28_16910) parE 3550215..3552107 (+) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -
  LFW28_RS16915 (LFW28_16915) ygiN 3552155..3552469 (-) 315 WP_000958598.1 putative quinol monooxygenase -
  LFW28_RS16920 (LFW28_16920) mdaB 3552500..3553081 (-) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  LFW28_RS16925 (LFW28_16925) ygiZ 3553400..3553732 (+) 333 WP_000917684.1 DUF2645 family protein -
  LFW28_RS16930 (LFW28_16930) qseC 3553778..3555127 (-) 1350 WP_000673402.1 quorum sensing histidine kinase QseC -
  LFW28_RS16935 (LFW28_16935) ciaR 3555124..3555783 (-) 660 WP_001221495.1 quorum sensing response regulator transcription factor QseB Regulator
  LFW28_RS16940 (LFW28_16940) ygiW 3555935..3556327 (+) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  LFW28_RS16945 (LFW28_16945) ygiV 3556380..3556862 (+) 483 WP_000183505.1 AraC family transcriptional regulator -
  LFW28_RS16950 (LFW28_16950) mqsR 3557067..3557363 (+) 297 WP_000415584.1 type II toxin-antitoxin system toxin MqsR -
  LFW28_RS16955 (LFW28_16955) mqsA 3557365..3557760 (+) 396 WP_000650107.1 type II toxin-antitoxin system antitoxin MqsA -
  LFW28_RS16960 (LFW28_16960) ygiS 3557893..3559500 (+) 1608 WP_001295629.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24677.59 Da        Isoelectric Point: 6.9850

>NTDB_id=535061 LFW28_RS16935 WP_001221495.1 3555124..3555783(-) (ciaR) [Escherichia coli strain Origami2-DE3]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=535061 LFW28_RS16935 WP_001221495.1 3555124..3555783(-) (ciaR) [Escherichia coli strain Origami2-DE3]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52076

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

37.885

100

0.393
  ciaR Streptococcus pneumoniae D39

37.885

100

0.393
  ciaR Streptococcus pneumoniae R6

37.885

100

0.393
  ciaR Streptococcus pneumoniae TIGR4

37.885

100

0.393
  ciaR Streptococcus mutans UA159

35.426

100

0.361