Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J37_RS04520 Genome accession   NZ_CP069486
Coordinates   891652..892182 (-) Length   176 a.a.
NCBI ID   WP_016912339.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain FDAARGOS_1207     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 891652..904466 891652..892182 within 0


Gene organization within MGE regions


Location: 891652..904466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J37_RS04520 (I6J37_04520) ssbA 891652..892182 (-) 531 WP_016912339.1 single-stranded DNA-binding protein Machinery gene
  I6J37_RS04525 (I6J37_04525) rpsF 892212..892505 (-) 294 WP_016912340.1 30S ribosomal protein S6 -
  I6J37_RS13325 - 892976..894631 (+) 1656 WP_239102452.1 DUF4041 domain-containing protein -
  I6J37_RS13330 - 894705..895169 (-) 465 WP_239102453.1 hypothetical protein -
  I6J37_RS04545 (I6J37_04545) - 895166..895750 (-) 585 WP_103323592.1 recombinase family protein -
  I6J37_RS04550 (I6J37_04550) - 896356..897318 (+) 963 WP_103323522.1 M23 family metallopeptidase -
  I6J37_RS04555 (I6J37_04555) hypR 897435..897869 (+) 435 WP_204107870.1 redox-sensitive transcriptional regulator HypR -
  I6J37_RS04560 (I6J37_04560) merA 897856..899178 (+) 1323 WP_103323523.1 hypothiocyanous acid reductase MerA -
  I6J37_RS04565 (I6J37_04565) - 899309..900070 (-) 762 WP_103323664.1 HNH endonuclease -
  I6J37_RS04570 (I6J37_04570) - 900057..901073 (-) 1017 WP_204107871.1 hypothetical protein -
  I6J37_RS13335 - 901954..902235 (+) 282 Protein_888 Bro-N domain-containing protein -
  I6J37_RS04580 (I6J37_04580) - 903269..903454 (-) 186 WP_103323402.1 hypothetical protein -
  I6J37_RS04585 (I6J37_04585) - 903456..904466 (-) 1011 WP_103323403.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19597.19 Da        Isoelectric Point: 4.7512

>NTDB_id=535014 I6J37_RS04520 WP_016912339.1 891652..892182(-) (ssbA) [Mammaliicoccus vitulinus strain FDAARGOS_1207]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNSQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSNNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNNQQSSNPF
ANANGPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=535014 I6J37_RS04520 WP_016912339.1 891652..892182(-) (ssbA) [Mammaliicoccus vitulinus strain FDAARGOS_1207]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACCTTAGCTATCAATCGTACTTTTACGAATTCGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTTCTTGAACCTAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAACCAATCAAATAACCAAAATAATAACGAGTTCCAGAATTATGGACAAGACT
TTGGCGGTAATCAGCAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATAATCAACAATCAAGTAACCCATTT
GCGAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.57

100

0.636
  ssb Latilactobacillus sakei subsp. sakei 23K

53.889

100

0.551
  ssb Glaesserella parasuis strain SC1401

33.166

100

0.375