Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LEL86_RS10890 Genome accession   NZ_CP084357
Coordinates   2406126..2408255 (+) Length   709 a.a.
NCBI ID   WP_225681003.1    Uniprot ID   -
Organism   Streptomyces sp. WA6-1-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2401126..2413255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS10865 (LEL86_10865) - 2401562..2402779 (-) 1218 WP_412556808.1 MFS transporter -
  LEL86_RS10870 (LEL86_10870) - 2402984..2403508 (+) 525 WP_225681001.1 hypothetical protein -
  LEL86_RS10875 (LEL86_10875) - 2403505..2404062 (-) 558 WP_093442754.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LEL86_RS10880 (LEL86_10880) - 2404131..2405018 (-) 888 WP_032778331.1 glycerophosphodiester phosphodiesterase family protein -
  LEL86_RS10885 (LEL86_10885) - 2405250..2406086 (+) 837 WP_225681002.1 MHYT domain-containing protein -
  LEL86_RS10890 (LEL86_10890) uvrB 2406126..2408255 (+) 2130 WP_225681003.1 excinuclease ABC subunit UvrB Machinery gene
  LEL86_RS10895 (LEL86_10895) - 2408471..2409049 (+) 579 WP_093442746.1 TerD family protein -
  LEL86_RS10900 (LEL86_10900) - 2409244..2411232 (+) 1989 WP_225681004.1 TerD family protein -
  LEL86_RS10905 (LEL86_10905) - 2411475..2412491 (+) 1017 WP_109178139.1 TerC family protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79986.77 Da        Isoelectric Point: 4.8594

>NTDB_id=534944 LEL86_RS10890 WP_225681003.1 2406126..2408255(+) (uvrB) [Streptomyces sp. WA6-1-16]
MRPVSKIERSVRPFEVVSPYQPSGDQPTAIAELERRIRADEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVQLKVGEEIDRDQLLRRFVEMQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIENLSTLHPLTG
EIISEDPTVHVFPASHYVAGPERMERAVSGIEQELEQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDDRAPGTAPNTLLDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSAMDNRPLKWEEFLKRIDQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRERTERDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMEQAIDETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREEVDTEQLLGTGYRQGKETKAPVPALGGKAA
KGGAKGRAAKAGAVTGDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMKEAGMA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=534944 LEL86_RS10890 WP_225681003.1 2406126..2408255(+) (uvrB) [Streptomyces sp. WA6-1-16]
ATGCGGCCCGTTTCCAAGATCGAACGTTCGGTGCGGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
GACGGCCATCGCCGAGCTGGAGCGGCGAATCCGCGCCGATGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGAA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTGCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACGCTCGCCGCC
CAGCTGGCCAACGAGTTCCGTGAGCTCCTCCCGAACAACGCGGTGGAGTATTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCCATCAACGAGGAGGTCGAGCGGCTGCGTCACT
CGGCGACGAATTCGCTGCTCACCCGGCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACACCC
CAGGAGTACGTGGACCGCATGGTCCAGCTCAAGGTCGGCGAGGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTCGA
GATGCAGTACACCCGCAACGACCTGGCGTTCACCCGCGGCACCTTCCGGGTCCGGGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGAACCTGTCCACGCTCCACCCGCTCACCGGC
GAGATCATCAGCGAGGACCCCACGGTCCACGTCTTCCCCGCCAGTCACTACGTCGCCGGCCCCGAGCGCATGGAGCGGGC
CGTCAGCGGCATCGAGCAGGAGCTGGAGCAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGCC
TGCGCATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCCGGCGTCGAGAACTACTCGATGCAT
TTCGACGACCGCGCACCCGGCACCGCCCCCAACACCCTCCTCGACTACTTCCCGGACGACTTCCTGCTCGTCCTGGACGA
GTCCCACGTCACCGTCCCGCAGATCGGCGCGATGTACGAGGGGGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTGCCGTCCGCCATGGACAACCGGCCGCTGAAGTGGGAGGAGTTCCTGAAGCGGATCGACCAGACGGTGTATCTC
TCGGCCACCCCGGGGAAGTACGAGCTCTCGCGCGGCGACGGGTTCGTCGAGCAGATCATCCGCCCCACCGGTCTCGTCGA
CCCCGAGGTCGTCGTGAAGCCCACCGAGGGCCAGATCGACGACCTGGTCCACGAGATCCGCGAGCGCACCGAACGCGACG
AGCGGGTCCTCGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGCTCCGGCGAGTACGACGTCCT
CGTCGGTATCAACCTGCTGCGCGAGGGCCTCGACCTTCCCGAGGTGTCCCTCGTGGCCATTCTCGACGCCGACAAACAGG
GCTTCCTGCGCTCGGGCACCTCGCTCATCCAGACCATCGGCCGCGCCGCCCGTAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGGTCACCCCGGCCATGGAGCAGGCGATCGACGAGACGAACCGCCGCCGCGAGAAGCAGATCGCGTACAACAC
CGAGCGGGGCATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGACCATCGCCCGCGAGGAGGTCGACA
CCGAGCAGCTCCTCGGCACCGGCTACCGGCAGGGCAAGGAGACCAAGGCCCCGGTCCCCGCGCTCGGGGGCAAGGCAGCC
AAGGGCGGGGCGAAGGGCAGGGCCGCCAAGGCCGGCGCCGTGACCGGCGACCGCCCCGCGACCGAACTGGCAGGGATCAT
CGAGGAGATGACCGACCGGATGCGGGCCGCCGCCGCGGATCTGCAGTTCGAGGTGGCCGCCCGGCTGCGCGACGAGGTCG
GTGAACTGAAGAAGGAACTGCGTCAGATGAAGGAAGCGGGCATGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB interaction domain (UvrB_inter)

(168-257)

UvrB/uvrC motif (UVR)

(667-699)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.25

97.038

0.546
  uvrB Streptococcus pneumoniae R6

56.25

97.038

0.546
  uvrB Streptococcus pneumoniae D39

56.25

97.038

0.546