Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J73_RS02795 Genome accession   NZ_CP069473
Coordinates   562947..563456 (-) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain FDAARGOS_1243     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 549502..564969 562947..563456 within 0


Gene organization within MGE regions


Location: 549502..564969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J73_RS02700 (I6J73_02700) - 549502..550815 (-) 1314 WP_002487938.1 ImmA/IrrE family metallo-endopeptidase -
  I6J73_RS02705 (I6J73_02705) - 550828..551142 (-) 315 WP_002487916.1 hypothetical protein -
  I6J73_RS02710 (I6J73_02710) - 551314..551880 (-) 567 WP_049400059.1 terminase small subunit -
  I6J73_RS02715 (I6J73_02715) - 551940..552626 (-) 687 WP_049389853.1 hypothetical protein -
  I6J73_RS02720 (I6J73_02720) - 552646..553179 (-) 534 WP_049389852.1 hypothetical protein -
  I6J73_RS02725 (I6J73_02725) - 553192..553530 (-) 339 WP_002438931.1 hypothetical protein -
  I6J73_RS02730 (I6J73_02730) - 553866..554507 (-) 642 WP_049400062.1 pathogenicity island protein -
  I6J73_RS02735 (I6J73_02735) - 554521..554886 (-) 366 WP_002505289.1 hypothetical protein -
  I6J73_RS02740 (I6J73_02740) - 555216..556925 (-) 1710 WP_002505290.1 DUF927 domain-containing protein -
  I6J73_RS02745 (I6J73_02745) - 556940..557812 (-) 873 WP_002505291.1 primase alpha helix C-terminal domain-containing protein -
  I6J73_RS02750 (I6J73_02750) - 557901..558212 (-) 312 WP_002485637.1 DUF1474 family protein -
  I6J73_RS02755 (I6J73_02755) - 558196..558423 (-) 228 WP_002505292.1 hypothetical protein -
  I6J73_RS02760 (I6J73_02760) - 558574..558846 (-) 273 WP_002505293.1 helix-turn-helix domain-containing protein -
  I6J73_RS02765 (I6J73_02765) - 558882..559085 (-) 204 WP_002445790.1 helix-turn-helix domain-containing protein -
  I6J73_RS02770 (I6J73_02770) - 559220..560011 (+) 792 WP_002505294.1 helix-turn-helix transcriptional regulator -
  I6J73_RS02775 (I6J73_02775) - 560150..560683 (+) 534 WP_002505295.1 Ltp family lipoprotein -
  I6J73_RS02780 (I6J73_02780) - 560731..561273 (+) 543 WP_002505296.1 hypothetical protein -
  I6J73_RS02785 (I6J73_02785) - 561294..562514 (+) 1221 WP_049400067.1 site-specific integrase -
  I6J73_RS02790 (I6J73_02790) rpsR 562660..562902 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  I6J73_RS02795 (I6J73_02795) ssbA 562947..563456 (-) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  I6J73_RS02800 (I6J73_02800) rpsF 563479..563775 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  I6J73_RS02805 (I6J73_02805) - 564160..564969 (+) 810 WP_001831342.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=534930 I6J73_RS02795 WP_001831333.1 562947..563456(-) (ssbA) [Staphylococcus epidermidis strain FDAARGOS_1243]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=534930 I6J73_RS02795 WP_001831333.1 562947..563456(-) (ssbA) [Staphylococcus epidermidis strain FDAARGOS_1243]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379