Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   KBP30_RS38510 Genome accession   NZ_CP084203
Coordinates   8867265..8867900 (+) Length   211 a.a.
NCBI ID   WP_189295762.1    Uniprot ID   -
Organism   Streptomyces sp. Go40/10 strain Go 40/10     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8862265..8872900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP30_RS38490 (KBP30_38525) - 8863145..8863795 (-) 651 WP_230922173.1 hypothetical protein -
  KBP30_RS38495 (KBP30_38530) amiE 8863951..8864634 (-) 684 WP_230922174.1 ABC transporter ATP-binding protein Regulator
  KBP30_RS38500 (KBP30_38535) - 8864631..8865728 (-) 1098 WP_230922175.1 ABC transporter permease -
  KBP30_RS38505 (KBP30_38540) - 8865997..8867268 (+) 1272 WP_230922176.1 sensor histidine kinase -
  KBP30_RS38510 (KBP30_38545) vraR 8867265..8867900 (+) 636 WP_189295762.1 response regulator transcription factor Regulator
  KBP30_RS38515 (KBP30_38550) - 8868351..8869286 (+) 936 Protein_7604 ABC transporter ATP-binding protein -
  KBP30_RS38520 (KBP30_38555) - 8869454..8870821 (+) 1368 WP_230922177.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22071.26 Da        Isoelectric Point: 6.2598

>NTDB_id=534495 KBP30_RS38510 WP_189295762.1 8867265..8867900(+) (vraR) [Streptomyces sp. Go40/10 strain Go 40/10]
MTDTPIRLLLADDHPVVRAGLRAVLETEPGLEVVAEAATAEQAVERAAGGDIDVVLMDLQFGKGMNGAEATARITARPGA
PRVLIVTTYDSDADTLPAIEAGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPAVAERLLNRLRAPGTALTRRETEVLALV
AEGLSNQAVGRRLHLTEGTVKSHLARIYTKLAVDSRTAAVATATQLGLIRR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=534495 KBP30_RS38510 WP_189295762.1 8867265..8867900(+) (vraR) [Streptomyces sp. Go40/10 strain Go 40/10]
GTGACCGACACCCCCATCCGTCTCCTCCTGGCCGACGACCACCCCGTGGTCCGCGCCGGGCTGCGCGCCGTGCTGGAGAC
GGAACCCGGTCTGGAGGTGGTCGCCGAGGCCGCCACCGCCGAGCAGGCCGTCGAGCGCGCCGCCGGGGGCGACATCGACG
TCGTCCTCATGGACCTCCAGTTCGGCAAGGGCATGAACGGCGCCGAGGCCACCGCCCGGATCACCGCCCGTCCGGGTGCC
CCGCGCGTGCTGATCGTCACCACGTACGACTCCGATGCCGACACCCTGCCCGCCATCGAGGCGGGCGCCACCGGCTACCT
CCTCAAGGACGCCCCTCCCGAGGACCTGGCCGCCGCCGTGCGCACCGCCGCCGCCGGACGCACCACCCTGGCCCCGGCCG
TCGCCGAACGCCTCCTGAACCGGCTGCGCGCACCGGGCACCGCCCTGACCCGGCGCGAGACCGAAGTCCTCGCCCTGGTC
GCCGAGGGCCTGTCCAACCAGGCCGTCGGTCGCCGCCTCCACCTCACCGAGGGCACGGTCAAATCCCACCTGGCCCGCAT
CTACACCAAGCTCGCCGTCGACTCCCGCACCGCCGCCGTCGCCACCGCCACCCAGCTCGGCCTCATCCGCCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

98.578

0.37
  degU Bacillus subtilis subsp. subtilis str. 168

33.628

100

0.36