Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KBP30_RS38495 Genome accession   NZ_CP084203
Coordinates   8863951..8864634 (-) Length   227 a.a.
NCBI ID   WP_230922174.1    Uniprot ID   -
Organism   Streptomyces sp. Go40/10 strain Go 40/10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 8858951..8869634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP30_RS38475 (KBP30_38510) - 8859478..8860524 (+) 1047 WP_230922172.1 PhlD -
  KBP30_RS38480 (KBP30_38515) - 8860687..8861343 (+) 657 WP_189295754.1 hypothetical protein -
  KBP30_RS38485 (KBP30_38520) - 8861380..8863074 (-) 1695 WP_230922896.1 serine/threonine-protein kinase -
  KBP30_RS38490 (KBP30_38525) - 8863145..8863795 (-) 651 WP_230922173.1 hypothetical protein -
  KBP30_RS38495 (KBP30_38530) amiE 8863951..8864634 (-) 684 WP_230922174.1 ABC transporter ATP-binding protein Regulator
  KBP30_RS38500 (KBP30_38535) - 8864631..8865728 (-) 1098 WP_230922175.1 ABC transporter permease -
  KBP30_RS38505 (KBP30_38540) - 8865997..8867268 (+) 1272 WP_230922176.1 sensor histidine kinase -
  KBP30_RS38510 (KBP30_38545) vraR 8867265..8867900 (+) 636 WP_189295762.1 response regulator transcription factor Regulator
  KBP30_RS38515 (KBP30_38550) - 8868351..8869286 (+) 936 Protein_7604 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24039.34 Da        Isoelectric Point: 7.6549

>NTDB_id=534494 KBP30_RS38495 WP_230922174.1 8863951..8864634(-) (amiE) [Streptomyces sp. Go40/10 strain Go 40/10]
MSLQLTDITLTYPDGEDRLTALDRVTLDVPRGSLTAVVGPSGSGKSSLLAVAATLVTPDTGTVTVDGTTTTGMTRGDLTD
LRRHKIGIVFQQPSLLASLTAAEQLQVMAHIDGRSPAGARGRAMDLLDAVGLADHAHRRPHQLSGGQRQRVNIARALMND
PTVLLVDEPTSALDHERGAAVIDLIARLTRRRATATVLVTHDRAHLTVADRIAEVHDGRLRLPAGAG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=534494 KBP30_RS38495 WP_230922174.1 8863951..8864634(-) (amiE) [Streptomyces sp. Go40/10 strain Go 40/10]
ATGAGTCTGCAACTGACCGACATCACCCTCACGTACCCCGACGGCGAGGACCGCCTGACCGCGCTCGACCGCGTCACCCT
GGACGTCCCCCGGGGCAGCCTGACCGCCGTCGTCGGCCCCTCCGGCTCCGGCAAGTCCAGCCTGCTGGCCGTCGCCGCGA
CCCTCGTCACCCCGGACACGGGCACCGTCACCGTCGACGGGACGACCACCACCGGCATGACCCGCGGCGACCTCACCGAC
CTGCGCCGCCACAAGATCGGCATCGTCTTCCAGCAGCCCAGTCTGCTGGCCTCCCTCACCGCCGCCGAACAGCTCCAGGT
CATGGCCCACATCGACGGCCGCTCGCCCGCCGGGGCCCGCGGCCGGGCCATGGACCTGCTCGACGCCGTCGGCCTCGCCG
ACCACGCGCACCGCCGCCCCCACCAGCTCTCCGGCGGGCAGCGCCAGCGCGTCAACATCGCCCGCGCCCTGATGAACGAC
CCCACGGTGCTCCTGGTCGACGAGCCGACCAGCGCCCTCGACCACGAACGCGGCGCCGCCGTCATCGACCTGATCGCCCG
CCTCACCCGCCGGAGGGCCACCGCCACCGTGCTGGTCACCCACGACCGCGCCCACCTCACCGTCGCGGACCGGATCGCCG
AGGTCCACGACGGCCGGCTCCGCCTGCCGGCCGGCGCGGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

37.179

100

0.383
  amiE Streptococcus thermophilus LMG 18311

36.325

100

0.374
  amiE Streptococcus thermophilus LMD-9

36.325

100

0.374