Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   KBP30_RS29975 Genome accession   NZ_CP084203
Coordinates   6963164..6965302 (+) Length   712 a.a.
NCBI ID   WP_230921108.1    Uniprot ID   -
Organism   Streptomyces sp. Go40/10 strain Go 40/10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6958164..6970302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP30_RS29950 (KBP30_29970) - 6959038..6959946 (-) 909 WP_230921106.1 pseudouridine-5'-phosphate glycosidase -
  KBP30_RS29955 (KBP30_29975) - 6960050..6960493 (+) 444 WP_230921107.1 VOC family protein -
  KBP30_RS29960 (KBP30_29980) - 6960498..6961052 (-) 555 WP_189303991.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  KBP30_RS29965 (KBP30_29985) - 6961094..6961966 (-) 873 WP_189303993.1 glycerophosphodiester phosphodiesterase family protein -
  KBP30_RS29970 (KBP30_29990) - 6962245..6963123 (+) 879 WP_189303995.1 MHYT domain-containing protein -
  KBP30_RS29975 (KBP30_29995) uvrB 6963164..6965302 (+) 2139 WP_230921108.1 excinuclease ABC subunit UvrB Machinery gene
  KBP30_RS29980 (KBP30_30000) - 6965475..6966053 (+) 579 WP_189303999.1 TerD family protein -
  KBP30_RS29985 (KBP30_30005) - 6966173..6968176 (+) 2004 WP_230921109.1 TerD family protein -
  KBP30_RS29990 (KBP30_30010) - 6968405..6969406 (+) 1002 WP_230921110.1 TerC family protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 79976.78 Da        Isoelectric Point: 4.8610

>NTDB_id=534473 KBP30_RS29975 WP_230921108.1 6963164..6965302(+) (uvrB) [Streptomyces sp. Go40/10 strain Go 40/10]
MRPVSHIERTVAPFEVVSPYQPSGDQPAAIAELAKRIEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGDEIDRDELLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPITG
EIISDDQQLYVFPASHYVAGPERMERAVNGIEKELGERLAELEKQGKLLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGTYEMSRSDGAVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIEETNRRREKQIAYNKANGIDPQPLRKKINDIVAQIAREEVDTEQLLGSGYRSTKDGKGAKAPVPSLGD
KAAKGAKAGKTAKGKAVPTDRPAAELAEQIEEMTERMRAAAAELQFEVAARLRDEVAEMKKELRQMREAGLA

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=534473 KBP30_RS29975 WP_230921108.1 6963164..6965302(+) (uvrB) [Streptomyces sp. Go40/10 strain Go 40/10]
ATGCGGCCCGTTTCCCACATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGTGACCAGCC
GGCGGCCATCGCCGAGCTGGCCAAGCGCATCGAGGCCGGTGAGAAGGACGTCGTCCTCCTGGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGTCCCACCCTCGTGATGGCACCGAACAAGACGCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCCCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CGGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCGGTGTCCTGCATCTACGGCCTCGGCACGCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCCGGGTCGGCGACGAGATCGACCGGGACGAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTGGCCTTCACCCGCGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCCACGCTCCACCCGATCACCGGC
GAGATCATCAGCGACGACCAGCAGCTCTACGTCTTCCCCGCCTCCCACTACGTCGCAGGCCCCGAGCGCATGGAGCGGGC
CGTCAACGGCATCGAGAAGGAGCTGGGGGAGCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TTCGCATGCGCACCACCTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCCTGCCCGGCTCCCCGCCCAACACCCTGCTGGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTGACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTTGTGGACCACGGCT
TCCGCCTGCCCTCCGCCCTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGTCAGACCGTCTACCTG
TCGGCCACCCCGGGCACCTACGAGATGTCCCGCTCGGACGGCGCGGTCGAGCAGATCATCCGCCCGACCGGCCTGGTCGA
CCCGGAGGTCGTGGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGGGTCCTCGTCACCACGCTGACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGTATCGAGCTGCTGCGCGAGCTGCGCTCCGGTGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGTGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTGGACGCCGACAAGGAGG
GCTTCCTCCGCTCGGGCACCTCGCTGATCCAGACCATCGGCCGTGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGATCGCCTACAACAA
GGCGAACGGCATCGACCCCCAGCCCCTGCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGAGGTCGACA
CCGAGCAACTCCTCGGCTCCGGTTACCGCAGCACGAAGGACGGCAAGGGCGCGAAGGCCCCCGTCCCGTCGCTCGGTGAC
AAGGCGGCCAAGGGAGCGAAGGCCGGCAAGACTGCCAAGGGCAAGGCGGTGCCCACGGACCGTCCGGCGGCCGAACTGGC
CGAGCAGATCGAGGAGATGACCGAGCGCATGCGCGCCGCCGCCGCGGAGCTGCAGTTCGAGGTCGCGGCCCGGCTGCGCG
ACGAGGTCGCCGAGATGAAGAAGGAACTGCGCCAGATGCGGGAGGCAGGCCTCGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB/uvrC motif (UVR)

(668-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

56.776

98.455

0.559
  uvrB Streptococcus pneumoniae TIGR4

56.776

98.455

0.559
  uvrB Streptococcus pneumoniae D39

56.776

98.455

0.559