Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   JR311_RS18385 Genome accession   NZ_CP069391
Coordinates   3739601..3739720 (+) Length   39 a.a.
NCBI ID   WP_127069886.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3734601..3744720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS18365 (JR311_18365) - 3734951..3735463 (+) 513 Protein_3582 bacteriocin biosynthesis protein AlbG -
  JR311_RS18370 (JR311_18370) - 3735470..3736846 (-) 1377 WP_204530036.1 YncE family protein -
  JR311_RS18375 (JR311_18375) - 3736886..3738241 (-) 1356 WP_165409255.1 YncE family protein -
  JR311_RS18380 (JR311_18380) rapF 3738472..3739617 (+) 1146 WP_127069887.1 tetratricopeptide repeat protein Regulator
  JR311_RS18385 (JR311_18385) phrF 3739601..3739720 (+) 120 WP_127069886.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JR311_RS18390 (JR311_18390) - 3739919..3740122 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  JR311_RS18395 (JR311_18395) - 3740136..3740339 (+) 204 WP_127069885.1 hypothetical protein -
  JR311_RS18400 (JR311_18400) - 3740376..3740561 (+) 186 Protein_3589 DUF4177 domain-containing protein -
  JR311_RS18405 (JR311_18405) - 3740749..3741030 (+) 282 WP_014306021.1 hypothetical protein -
  JR311_RS18410 (JR311_18410) - 3741074..3741586 (+) 513 WP_032859656.1 stage II sporulation protein M -
  JR311_RS18415 (JR311_18415) - 3742177..3742395 (-) 219 WP_071182043.1 helix-turn-helix transcriptional regulator -
  JR311_RS18420 (JR311_18420) speB 3742565..3743437 (-) 873 WP_003151054.1 agmatinase -
  JR311_RS18425 (JR311_18425) speE 3743497..3744327 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4268.07 Da        Isoelectric Point: 8.0195

>NTDB_id=534410 JR311_RS18385 WP_127069886.1 3739601..3739720(+) (phrF) [Bacillus velezensis strain Sam8H1]
MKLKYKLALTCLAVSTVFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=534410 JR311_RS18385 WP_127069886.1 3739601..3739720(+) (phrF) [Bacillus velezensis strain Sam8H1]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462