Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   JR311_RS18380 Genome accession   NZ_CP069391
Coordinates   3738472..3739617 (+) Length   381 a.a.
NCBI ID   WP_127069887.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3733472..3744617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS18360 (JR311_18360) - 3734369..3734797 (-) 429 WP_032869448.1 DUF1934 domain-containing protein -
  JR311_RS18365 (JR311_18365) - 3734951..3735463 (+) 513 Protein_3582 bacteriocin biosynthesis protein AlbG -
  JR311_RS18370 (JR311_18370) - 3735470..3736846 (-) 1377 WP_204530036.1 YncE family protein -
  JR311_RS18375 (JR311_18375) - 3736886..3738241 (-) 1356 WP_165409255.1 YncE family protein -
  JR311_RS18380 (JR311_18380) rapF 3738472..3739617 (+) 1146 WP_127069887.1 tetratricopeptide repeat protein Regulator
  JR311_RS18385 (JR311_18385) phrF 3739601..3739720 (+) 120 WP_127069886.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JR311_RS18390 (JR311_18390) - 3739919..3740122 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  JR311_RS18395 (JR311_18395) - 3740136..3740339 (+) 204 WP_127069885.1 hypothetical protein -
  JR311_RS18400 (JR311_18400) - 3740376..3740561 (+) 186 Protein_3589 DUF4177 domain-containing protein -
  JR311_RS18405 (JR311_18405) - 3740749..3741030 (+) 282 WP_014306021.1 hypothetical protein -
  JR311_RS18410 (JR311_18410) - 3741074..3741586 (+) 513 WP_032859656.1 stage II sporulation protein M -
  JR311_RS18415 (JR311_18415) - 3742177..3742395 (-) 219 WP_071182043.1 helix-turn-helix transcriptional regulator -
  JR311_RS18420 (JR311_18420) speB 3742565..3743437 (-) 873 WP_003151054.1 agmatinase -
  JR311_RS18425 (JR311_18425) speE 3743497..3744327 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45523.67 Da        Isoelectric Point: 4.6057

>NTDB_id=534409 JR311_RS18380 WP_127069887.1 3738472..3739617(+) (rapF) [Bacillus velezensis strain Sam8H1]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=534409 JR311_RS18380 WP_127069887.1 3738472..3739617(+) (rapF) [Bacillus velezensis strain Sam8H1]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTATTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCTTGGAAGATGACCAGGATCTTCACCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCATACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567