Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JR311_RS17430 Genome accession   NZ_CP069391
Coordinates   3548926..3550311 (-) Length   461 a.a.
NCBI ID   WP_156735506.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3543926..3555311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS17395 (JR311_17395) flgL 3544101..3545018 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  JR311_RS17400 (JR311_17400) flgK 3545030..3546547 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  JR311_RS17405 (JR311_17405) - 3546563..3547045 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JR311_RS17410 (JR311_17410) flgM 3547060..3547326 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JR311_RS17415 (JR311_17415) - 3547396..3547815 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  JR311_RS17420 (JR311_17420) comFC 3547889..3548578 (-) 690 WP_204530637.1 phosphoribosyltransferase family protein Machinery gene
  JR311_RS17425 (JR311_17425) - 3548584..3548868 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  JR311_RS17430 (JR311_17430) comFA 3548926..3550311 (-) 1386 WP_156735506.1 DEAD/DEAH box helicase Machinery gene
  JR311_RS17435 (JR311_17435) - 3550419..3551267 (-) 849 WP_156735505.1 DegV family protein -
  JR311_RS17440 (JR311_17440) degU 3551365..3552054 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JR311_RS17445 (JR311_17445) degS 3552131..3553294 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  JR311_RS17450 (JR311_17450) - 3553517..3554164 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52539.98 Da        Isoelectric Point: 10.1935

>NTDB_id=534403 JR311_RS17430 WP_156735506.1 3548926..3550311(-) (comFA) [Bacillus velezensis strain Sam8H1]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFCAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=534403 JR311_RS17430 WP_156735506.1 3548926..3550311(-) (comFA) [Bacillus velezensis strain Sam8H1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAATCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTTTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGTGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCAGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACCGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGGCTGAAAAA
AGCATTTGAGAAAGTTGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTAAGGGCAGAAGGCGTGCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629