Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JR311_RS17420 Genome accession   NZ_CP069391
Coordinates   3547889..3548578 (-) Length   229 a.a.
NCBI ID   WP_204530637.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3542889..3553578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS17385 (JR311_17385) fliW 3542980..3543411 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  JR311_RS17390 (JR311_17390) - 3543441..3544010 (-) 570 WP_204529991.1 DUF6470 family protein -
  JR311_RS17395 (JR311_17395) flgL 3544101..3545018 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  JR311_RS17400 (JR311_17400) flgK 3545030..3546547 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  JR311_RS17405 (JR311_17405) - 3546563..3547045 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JR311_RS17410 (JR311_17410) flgM 3547060..3547326 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JR311_RS17415 (JR311_17415) - 3547396..3547815 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  JR311_RS17420 (JR311_17420) comFC 3547889..3548578 (-) 690 WP_204530637.1 phosphoribosyltransferase family protein Machinery gene
  JR311_RS17425 (JR311_17425) - 3548584..3548868 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  JR311_RS17430 (JR311_17430) comFA 3548926..3550311 (-) 1386 WP_156735506.1 DEAD/DEAH box helicase Machinery gene
  JR311_RS17435 (JR311_17435) - 3550419..3551267 (-) 849 WP_156735505.1 DegV family protein -
  JR311_RS17440 (JR311_17440) degU 3551365..3552054 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JR311_RS17445 (JR311_17445) degS 3552131..3553294 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=534402 JR311_RS17420 WP_204530637.1 3547889..3548578(-) (comFC) [Bacillus velezensis strain Sam8H1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=534402 JR311_RS17420 WP_204530637.1 3547889..3548578(-) (comFC) [Bacillus velezensis strain Sam8H1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCGTTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCTGAAGTCCTGCTGA
CAGCGGGTAAAGCATCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603