Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JR311_RS03120 Genome accession   NZ_CP069391
Coordinates   617077..618030 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 612077..623030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS03095 (JR311_03095) - 612122..613555 (+) 1434 WP_162262652.1 sensor histidine kinase -
  JR311_RS03100 (JR311_03100) rapC 613708..614856 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  JR311_RS03105 (JR311_03105) phrC 614840..614959 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JR311_RS03110 (JR311_03110) - 615108..615218 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  JR311_RS03115 (JR311_03115) - 615298..616662 (-) 1365 WP_156735927.1 aspartate kinase -
  JR311_RS03120 (JR311_03120) ceuB 617077..618030 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  JR311_RS03125 (JR311_03125) - 618020..618967 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  JR311_RS03130 (JR311_03130) - 618961..619719 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  JR311_RS03135 (JR311_03135) - 619741..620685 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  JR311_RS03140 (JR311_03140) - 620727..622151 (-) 1425 WP_015388705.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=534349 JR311_RS03120 WP_003156332.1 617077..618030(+) (ceuB) [Bacillus velezensis strain Sam8H1]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=534349 JR311_RS03120 WP_003156332.1 617077..618030(+) (ceuB) [Bacillus velezensis strain Sam8H1]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCTTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533