Detailed information NTG0534347

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: JR311_RS03100
• Genome accession: NZ_CP069391
• Coordinates: 613708..614856 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain Sam8H1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 608708..619856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JR311_RS03080 (JR311_03080)	-	609105..609788 (-)	684	WP_204530276.1	ABC transporter ATP-binding protein	-
JR311_RS03085 (JR311_03085)	-	609803..611239 (-)	1437	WP_146276111.1	ABC transporter permease	-
JR311_RS03090 (JR311_03090)	-	611452..612135 (+)	684	WP_014416901.1	response regulator transcription factor	-
JR311_RS03095 (JR311_03095)	-	612122..613555 (+)	1434	WP_162262652.1	sensor histidine kinase	-
JR311_RS03100 (JR311_03100)	rapC	613708..614856 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
JR311_RS03105 (JR311_03105)	phrC	614840..614959 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
JR311_RS03110 (JR311_03110)	-	615108..615218 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
JR311_RS03115 (JR311_03115)	-	615298..616662 (-)	1365	WP_156735927.1	aspartate kinase	-
JR311_RS03120 (JR311_03120)	ceuB	617077..618030 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
JR311_RS03125 (JR311_03125)	-	618020..618967 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
JR311_RS03130 (JR311_03130)	-	618961..619719 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=534347 JR311_RS03100 WP_003156336.1 613708..614856(+) (rapC) [Bacillus velezensis strain Sam8H1]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=534347 JR311_RS03100 WP_003156336.1 613708..614856(+) (rapC) [Bacillus velezensis strain Sam8H1]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568