Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LB316_RS08215 Genome accession   NZ_CP084107
Coordinates   1699518..1700120 (-) Length   200 a.a.
NCBI ID   WP_029753621.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1694518..1705120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS08195 (LB316_08190) yajC 1696014..1696274 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  LB316_RS08200 (LB316_08195) tgt 1696293..1697432 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LB316_RS08205 (LB316_08200) queA 1697455..1698480 (-) 1026 WP_001019165.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LB316_RS08210 (LB316_08205) ruvB 1698482..1699486 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LB316_RS08215 (LB316_08210) ruvA 1699518..1700120 (-) 603 WP_029753621.1 Holliday junction branch migration protein RuvA Machinery gene
  LB316_RS08220 (LB316_08215) - 1700134..1700589 (-) 456 WP_000368902.1 ACT domain-containing protein -
  LB316_RS08225 (LB316_08220) obgE 1700602..1701894 (-) 1293 WP_000496103.1 GTPase ObgE -
  LB316_RS08230 (LB316_08225) rpmA 1702377..1702661 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  LB316_RS08235 (LB316_08230) - 1702673..1702993 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LB316_RS08240 (LB316_08235) rplU 1702999..1703307 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  LB316_RS08245 (LB316_08240) mreD 1703669..1704199 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  LB316_RS08250 (LB316_08245) mreC 1704199..1705041 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22288.49 Da        Isoelectric Point: 5.7132

>NTDB_id=534299 LB316_RS08215 WP_029753621.1 1699518..1700120(-) (ruvA) [Staphylococcus aureus strain CC49/ST49-MSSA]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKYLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=534299 LB316_RS08215 WP_029753621.1 1699518..1700120(-) (ruvA) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGTATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCAACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAAGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425