Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   LB316_RS06040 Genome accession   NZ_CP084107
Coordinates   1230057..1232117 (+) Length   686 a.a.
NCBI ID   WP_001151490.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1225057..1237117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS06020 (LB316_06020) - 1225222..1226868 (-) 1647 WP_061811726.1 IS1182-like element ISSau3 family transposase -
  LB316_RS06025 (LB316_06025) rpmB 1227201..1227389 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  LB316_RS06030 (LB316_06030) - 1227832..1228206 (+) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  LB316_RS06035 (LB316_06035) fakA 1228221..1229867 (+) 1647 WP_000623913.1 fatty acid kinase catalytic subunit FakA -
  LB316_RS06040 (LB316_06040) recG 1230057..1232117 (+) 2061 WP_001151490.1 ATP-dependent DNA helicase RecG Machinery gene
  LB316_RS06045 (LB316_06045) fapR 1232319..1232891 (+) 573 WP_001548538.1 transcription factor FapR -
  LB316_RS06050 (LB316_06050) plsX 1232896..1233882 (+) 987 WP_000239738.1 phosphate acyltransferase PlsX -
  LB316_RS06055 (LB316_06055) fabD 1233875..1234801 (+) 927 WP_001043838.1 ACP S-malonyltransferase -
  LB316_RS06060 (LB316_06060) fabG 1234794..1235528 (+) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  LB316_RS06065 (LB316_06065) - 1235898..1236131 (+) 234 WP_000426914.1 acyl carrier protein -
  LB316_RS06070 (LB316_06070) rnc 1236247..1236978 (+) 732 WP_000043237.1 ribonuclease III -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78271.75 Da        Isoelectric Point: 5.9590

>NTDB_id=534270 LB316_RS06040 WP_001151490.1 1230057..1232117(+) (recG) [Staphylococcus aureus strain CC49/ST49-MSSA]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQNQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDLDQVKSFIDCLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLIALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDNVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=534270 LB316_RS06040 WP_001151490.1 1230057..1232117(+) (recG) [Staphylococcus aureus strain CC49/ST49-MSSA]
TTGGCGAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAATTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACCAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACTGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAACCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGTACACAAAATCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCATTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
TAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACGTTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACTTAGACCAAGTTAAATCATTTATTGATTGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATTGCTTTATTTGGAGATTCTATGAACGTTGCGTTGTTAAC
TGGATCAGTAAAAGGTAAGAAACGAAAAATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCATTGATTCAAGATGATGTAATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACCCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCACGAGCAATACGATAATGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTTATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAAGTCATGCAAAAGTTTAGCAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGACGTGTGGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCCTCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGCCCTGGCGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-175)

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

DEAD/DEAH box helicase (DEAD)

(267-422)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516
  recG/mmsA Streptococcus pneumoniae R6

50.388

94.023

0.474
  recG/mmsA Streptococcus pneumoniae R36A

50.388

94.023

0.474
  recG Neisseria meningitidis strain C311

39.79

97.085

0.386