Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JM642_RS05715 Genome accession   NZ_CP069350
Coordinates   1274955..1276028 (+) Length   357 a.a.
NCBI ID   WP_037420979.1    Uniprot ID   A0A501XXR1
Organism   Shewanella sp. LZH-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1269955..1281028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM642_RS05700 (JM642_05700) - 1269960..1270856 (+) 897 WP_203433111.1 peptidoglycan DD-metalloendopeptidase family protein -
  JM642_RS05705 (JM642_05705) rpoS 1270938..1271918 (+) 981 WP_037421178.1 RNA polymerase sigma factor RpoS -
  JM642_RS05710 (JM642_05710) mutS 1272002..1274572 (-) 2571 WP_172589573.1 DNA mismatch repair protein MutS -
  JM642_RS05715 (JM642_05715) recA 1274955..1276028 (+) 1074 WP_037420979.1 recombinase RecA Machinery gene
  JM642_RS05720 (JM642_05720) - 1276103..1276513 (+) 411 WP_047537217.1 regulatory protein RecX -
  JM642_RS05725 (JM642_05725) alaS 1277068..1279692 (+) 2625 WP_203433113.1 alanine--tRNA ligase -
  JM642_RS05730 (JM642_05730) - 1279702..1280958 (+) 1257 WP_037420970.1 aspartate kinase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38086.53 Da        Isoelectric Point: 4.8722

>NTDB_id=534104 JM642_RS05715 WP_037420979.1 1274955..1276028(+) (recA) [Shewanella sp. LZH-2]
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSALASSASDDDNIEGNIDLETGEVF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=534104 JM642_RS05715 WP_037420979.1 1274955..1276028(+) (recA) [Shewanella sp. LZH-2]
ATGAAGGTCGATCCAAACAAAGAGAAAGCACTTGCTGCGGTATTGAGCCAAATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGACCGCTCTATGGATGTCGAGACCATTTCTACTGGCTCACTTTCCCTTGACGTCGCCTTAGGGG
CTGGCGGTTTACCAATGGGCCGTATTGTTGAGATTTATGGTCCTGAATCATCAGGTAAGACAACTCTGACATTAGAAGTG
ATTGCTGCTGCTCAGCGCGAAGGTAAAACCTGTGCCTTTATCGATGCTGAGCACGCTCTCGATCCTATCTACGCGAAAAA
GTTAGGCGTAGATATTGATAACTTATTGTGTTCACAACCCGATACCGGTGAACAAGCTCTTGAGATCTGTGATGCGTTAA
CCCGTTCTGGCGCGGTAGATGTGATCATCGTTGACTCGGTCGCGGCATTAACACCCAAGGCAGAAATTGAGGGCGAAATC
GGTGACTCACATATGGGCTTAGCGGCGCGTATGATGAGCCAAGCGATGCGTAAGTTAGCGGGTAACCTCAAGCAATCGAA
TACACTGTTAATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACGGGTGGTA
ATGCTCTGAAATTCTATGCTTCTGTTCGTTTAGATATTCGCCGTACTGGTGCTATCAAAGAAGGCGATGAAGTGGTTGGT
AACGAGACTCGTGTCAAAGTGGTTAAAAACAAAGTGGCTGCACCATTTAAGCAAGCTGAGTTTCAAATCCTTTACGGTCA
AGGTATCAACCGTACTGGCGAGTTAGTCGATTTAGGGGTAGCCCATAAACTGATTGAGAAAGCTGGTGCTTGGTATAGCT
ACAAGGGCGATAAAATTGGTCAAGGCCGTGCCAATGCGGGTAAATATTTGACTGAAAACCCAGCCATTGCCGCTGAAATC
GATAAGACATTGCGTGAGTTATTATTGAGTAACCCAAGTGCACTGGCATCATCAGCATCCGATGATGATAATATCGAGGG
GAATATTGATTTAGAAACAGGCGAAGTATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A501XXR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.899

96.639

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.899

96.639

0.801
  recA Pseudomonas stutzeri DSM 10701

73.021

95.518

0.697
  recA Glaesserella parasuis strain SC1401

68.571

98.039

0.672
  recA Acinetobacter baumannii D1279779

70.088

95.518

0.669
  recA Acinetobacter baylyi ADP1

71.903

92.717

0.667
  recA Neisseria gonorrhoeae MS11

69.35

90.476

0.627
  recA Neisseria gonorrhoeae MS11

69.35

90.476

0.627
  recA Neisseria gonorrhoeae strain FA1090

69.35

90.476

0.627
  recA Ralstonia pseudosolanacearum GMI1000

70.794

88.235

0.625
  recA Streptococcus mitis SK321

58.678

100

0.597
  recA Streptococcus mitis NCTC 12261

58.678

100

0.597
  recA Streptococcus pneumoniae TIGR4

63.415

91.877

0.583
  recA Streptococcus pneumoniae Rx1

63.415

91.877

0.583
  recA Streptococcus pneumoniae D39

63.415

91.877

0.583
  recA Streptococcus pneumoniae R6

63.415

91.877

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.42

96.639

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

93.277

0.569
  recA Streptococcus pyogenes NZ131

61.585

91.877

0.566
  recA Streptococcus mutans UA159

61.28

91.877

0.563
  recA Helicobacter pylori strain NCTC11637

60.241

92.997

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Helicobacter pylori 26695

59.94

92.997

0.557
  recA Lactococcus lactis subsp. cremoris KW2

60.061

91.877

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

61.442

89.356

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.27

88.235

0.541