Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JOJ89_RS19310 Genome accession   NZ_CP069296
Coordinates   3765526..3766638 (-) Length   370 a.a.
NCBI ID   WP_242524635.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3760526..3771638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS19275 flgL 3760760..3761641 (-) 882 WP_203289049.1 flagellar hook-associated protein FlgL -
  JOJ89_RS19280 flgK 3761652..3763172 (-) 1521 WP_203289050.1 flagellar hook-associated protein FlgK -
  JOJ89_RS19285 - 3763191..3763673 (-) 483 WP_203289051.1 flagellar protein FlgN -
  JOJ89_RS19290 flgM 3763691..3763948 (-) 258 WP_203289052.1 flagellar biosynthesis anti-sigma factor FlgM -
  JOJ89_RS19295 - 3764014..3764430 (-) 417 WP_203290390.1 TIGR03826 family flagellar region protein -
  JOJ89_RS19300 - 3764487..3765173 (-) 687 WP_203289053.1 ComF family protein -
  JOJ89_RS19305 - 3765170..3765445 (-) 276 WP_203289054.1 late competence development ComFB family protein -
  JOJ89_RS19310 comFA 3765526..3766638 (-) 1113 WP_242524635.1 DEAD/DEAH box helicase Machinery gene
  JOJ89_RS19315 - 3766977..3767162 (-) 186 WP_203289056.1 hypothetical protein -
  JOJ89_RS19320 - 3767431..3768273 (-) 843 WP_242524636.1 DegV family protein -
  JOJ89_RS19325 - 3768457..3769140 (-) 684 WP_029284755.1 response regulator transcription factor -
  JOJ89_RS19330 - 3769212..3770369 (-) 1158 WP_203289058.1 sensor histidine kinase -
  JOJ89_RS19335 - 3770541..3771176 (+) 636 WP_203289059.1 YigZ family protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 41141.41 Da        Isoelectric Point: 8.0658

>NTDB_id=533417 JOJ89_RS19310 WP_242524635.1 3765526..3766638(-) (comFA) [Metabacillus sp. cB07]
MGRVSECTPLIKWTGPCRPKSEAAFTGLKWEGKLSNAQQKGSDRMVYAVRNQQDLLLWAVCGAGKTEMLFHGIEAALSEN
KQVCLAAPRTDVILELTPRLRAAFPEVKIASLYGGSEERFQEADLVIATTHQLMRFTAAFDVLIIDEVDAFPFSADEKLQ
FAAARARKPDSSLIYLTATPSEKIKEAISLHVQIPQRYHGHPLPVPSFTWCGHYKRALQKKRLPEPLQQWVTDRLSLNKQ
AFLFVPSISILKDTVAILKEQNAAIEGVYAEDPNRKEKVQKFRDGAIPIIVTTTILERGVTIPDSDAAVLGAEAGIFTES
ALVQIAGRVGRSAAHPDGDVRFFHYGKTEAMIRAKKHIEMMNEEAEKVTF

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=533417 JOJ89_RS19310 WP_242524635.1 3765526..3766638(-) (comFA) [Metabacillus sp. cB07]
ATGGGACGAGTAAGCGAATGTACGCCCCTCATCAAATGGACAGGCCCGTGCCGGCCAAAGAGCGAGGCAGCGTTTACTGG
CCTGAAGTGGGAAGGCAAGCTTTCAAACGCCCAGCAAAAAGGGTCAGACCGAATGGTGTATGCTGTAAGAAATCAGCAGG
ATTTACTGCTCTGGGCCGTATGCGGAGCGGGCAAAACCGAGATGCTATTTCATGGAATTGAGGCAGCGCTGTCAGAGAAT
AAACAAGTTTGTCTTGCAGCCCCGAGAACCGATGTCATCCTTGAGCTGACTCCGAGACTGCGTGCTGCCTTTCCAGAAGT
GAAGATTGCCTCTCTCTACGGAGGAAGTGAAGAACGCTTCCAGGAAGCGGATCTCGTGATTGCAACGACCCATCAGCTCA
TGCGATTCACCGCTGCATTTGATGTCTTGATCATTGACGAAGTGGACGCCTTTCCATTTTCAGCAGACGAAAAACTCCAG
TTTGCGGCAGCCAGAGCCCGAAAGCCGGACAGTTCCCTAATTTACTTAACCGCCACCCCTTCAGAGAAAATTAAAGAAGC
CATCAGTCTTCATGTGCAAATCCCGCAAAGATACCACGGCCATCCACTTCCTGTTCCTTCCTTCACCTGGTGCGGGCATT
ACAAAAGGGCGCTTCAGAAAAAGAGACTCCCTGAACCGCTTCAGCAATGGGTCACTGACCGTCTTAGCTTAAACAAACAG
GCATTTCTATTTGTCCCTTCAATCTCCATTCTAAAAGACACTGTCGCGATCCTCAAAGAGCAGAACGCAGCGATAGAAGG
GGTCTATGCAGAAGATCCTAACCGGAAAGAAAAGGTGCAGAAATTCAGAGACGGCGCCATTCCGATCATTGTCACAACGA
CCATTCTGGAAAGGGGAGTCACCATTCCTGATTCGGATGCGGCAGTGCTCGGGGCAGAAGCCGGTATATTTACTGAAAGT
GCCCTTGTCCAAATTGCAGGACGCGTCGGCAGAAGCGCTGCACACCCTGATGGGGATGTCCGTTTTTTTCATTATGGGAA
AACAGAAGCCATGATTCGTGCCAAAAAGCATATCGAAATGATGAACGAGGAAGCGGAGAAAGTGACTTTCTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(237-332)

Type III restriction enzyme, res subunit (ResIII)

(34-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.406

100

0.53
  comFA Latilactobacillus sakei subsp. sakei 23K

42.939

93.784

0.403
  comFA Lactococcus lactis subsp. cremoris KW2

42.151

92.973

0.392
  comFA/cflA Streptococcus pneumoniae R6

41.86

92.973

0.389
  comFA/cflA Streptococcus pneumoniae Rx1

41.86

92.973

0.389
  comFA/cflA Streptococcus pneumoniae D39

41.86

92.973

0.389
  comFA/cflA Streptococcus pneumoniae TIGR4

41.57

92.973

0.386
  comFA/cflA Streptococcus mitis NCTC 12261

40.698

92.973

0.378
  comFA/cflA Streptococcus mitis SK321

40.116

92.973

0.373