Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   JOJ89_RS17545 Genome accession   NZ_CP069296
Coordinates   3418230..3418370 (-) Length   46 a.a.
NCBI ID   WP_029284053.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3413230..3423370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS17525 comA 3413944..3414585 (-) 642 WP_029284047.1 response regulator transcription factor Regulator
  JOJ89_RS21175 comP 3414666..3415994 (-) 1329 WP_234703445.1 sensor histidine kinase Regulator
  JOJ89_RS17535 comX 3416992..3417153 (-) 162 WP_081414235.1 competence pheromone ComX -
  JOJ89_RS17540 - 3417157..3418083 (-) 927 WP_203288682.1 polyprenyl synthetase family protein -
  JOJ89_RS17545 degQ 3418230..3418370 (-) 141 WP_029284053.1 degradation enzyme regulation protein DegQ Regulator
  JOJ89_RS17550 - 3418598..3418825 (-) 228 WP_203288683.1 hypothetical protein -
  JOJ89_RS17555 - 3418939..3419541 (-) 603 WP_203288684.1 pyroglutamyl-peptidase I -
  JOJ89_RS17560 - 3419643..3420545 (-) 903 WP_203290377.1 aldo/keto reductase -
  JOJ89_RS21315 - 3420607..3421200 (-) 594 WP_277987834.1 HDOD domain-containing protein -
  JOJ89_RS21320 - 3421106..3421840 (-) 735 WP_277987835.1 EAL domain-containing protein -
  JOJ89_RS17570 - 3421941..3423212 (-) 1272 WP_203288685.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5612.55 Da        Isoelectric Point: 10.0051

>NTDB_id=533415 JOJ89_RS17545 WP_029284053.1 3418230..3418370(-) (degQ) [Metabacillus sp. cB07]
MKKHNIEEITQLLKRLEKEIQETKQSLRMINKSIDKYDKYSFINVS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=533415 JOJ89_RS17545 WP_029284053.1 3418230..3418370(-) (degQ) [Metabacillus sp. cB07]
ATGAAAAAGCACAACATTGAAGAGATTACTCAATTATTGAAACGTCTTGAAAAAGAAATTCAAGAAACGAAGCAGTCGCT
GAGAATGATCAATAAAAGCATTGATAAGTATGATAAATACTCCTTTATAAACGTGTCATAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

62.162

80.435

0.5