Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JOJ89_RS17525 Genome accession   NZ_CP069296
Coordinates   3413944..3414585 (-) Length   213 a.a.
NCBI ID   WP_029284047.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408944..3419585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS17490 - 3409278..3409568 (+) 291 WP_029284033.1 Na(+)/H(+) antiporter subunit F1 -
  JOJ89_RS17495 mnhG 3409546..3409911 (+) 366 WP_029284035.1 monovalent cation/H(+) antiporter subunit G -
  JOJ89_RS17500 - 3409945..3410604 (+) 660 WP_029566630.1 DNA alkylation repair protein -
  JOJ89_RS17505 - 3410653..3411222 (-) 570 WP_029566631.1 GNAT family N-acetyltransferase -
  JOJ89_RS17510 - 3411247..3411639 (-) 393 WP_029284041.1 hotdog fold thioesterase -
  JOJ89_RS17515 - 3411653..3412714 (-) 1062 WP_242524627.1 PQQ-dependent sugar dehydrogenase -
  JOJ89_RS17520 - 3412975..3413673 (-) 699 WP_029566633.1 SIMPL domain-containing protein -
  JOJ89_RS17525 comA 3413944..3414585 (-) 642 WP_029284047.1 response regulator transcription factor Regulator
  JOJ89_RS21175 comP 3414666..3415994 (-) 1329 WP_234703445.1 sensor histidine kinase Regulator
  JOJ89_RS17535 comX 3416992..3417153 (-) 162 WP_081414235.1 competence pheromone ComX -
  JOJ89_RS17540 - 3417157..3418083 (-) 927 WP_203288682.1 polyprenyl synthetase family protein -
  JOJ89_RS17545 degQ 3418230..3418370 (-) 141 WP_029284053.1 degradation enzyme regulation protein DegQ Regulator
  JOJ89_RS17550 - 3418598..3418825 (-) 228 WP_203288683.1 hypothetical protein -
  JOJ89_RS17555 - 3418939..3419541 (-) 603 WP_203288684.1 pyroglutamyl-peptidase I -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24049.32 Da        Isoelectric Point: 5.0127

>NTDB_id=533414 JOJ89_RS17525 WP_029284047.1 3413944..3414585(-) (comA) [Metabacillus sp. cB07]
MLHILVVDDHPAVREGTKAILETDSQVKVSYLNPPYSKDVIQHLNFQEYDVILMDMNLGDINGMELSTEIIKHSEDCKII
LYTGYDVEDYFEEAIRLGIHGAISKTETKEKILSSIRHALSGDIVVPYSYLKSLILQQKNKSSSAHSETETLNEREKAIL
QEVERGLTNQEIADKLHLSKRSIEYSLTSIFNKLNVGSRTEAVLISKSEGIID

Nucleotide


Download         Length: 642 bp        

>NTDB_id=533414 JOJ89_RS17525 WP_029284047.1 3413944..3414585(-) (comA) [Metabacillus sp. cB07]
ATGTTGCATATTTTAGTTGTGGACGATCATCCGGCAGTGCGTGAAGGAACAAAGGCCATTCTTGAAACCGATTCACAAGT
GAAGGTTTCGTACCTGAATCCCCCTTACTCCAAAGATGTGATTCAGCACCTGAATTTTCAGGAGTATGATGTGATTCTTA
TGGATATGAACCTGGGAGACATAAACGGCATGGAGCTTTCCACAGAGATTATTAAGCACTCAGAGGATTGCAAAATTATT
TTATATACAGGCTATGATGTAGAGGATTATTTTGAAGAAGCCATCCGGCTTGGCATTCATGGAGCAATAAGCAAAACAGA
AACGAAAGAAAAAATTCTTTCTTCCATCCGGCATGCTCTTTCAGGGGATATTGTTGTTCCTTATTCCTATTTGAAATCCC
TCATTCTTCAGCAAAAAAATAAAAGCAGTTCTGCTCATTCAGAGACTGAGACGCTGAATGAAAGAGAAAAAGCCATTCTC
CAGGAGGTTGAACGCGGTTTAACCAACCAGGAAATTGCCGATAAGCTGCACTTGAGCAAGCGCTCGATCGAATATAGCCT
TACTTCCATCTTTAATAAATTAAATGTCGGGTCAAGAACAGAAGCCGTTCTGATTTCCAAATCCGAAGGCATTATTGATT
AG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

64.486

100

0.648