Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   JQR77_RS07540 Genome accession   NZ_CP069275
Coordinates   1474387..1475421 (-) Length   344 a.a.
NCBI ID   WP_372450197.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EG007     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1469387..1480421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQR77_RS07515 (JQR77_07530) ilvD 1469639..1471357 (-) 1719 WP_023909890.1 dihydroxy-acid dehydratase -
  JQR77_RS07520 (JQR77_07535) - 1471470..1472651 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  JQR77_RS07530 (JQR77_07545) trmB 1472887..1473528 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  JQR77_RS07535 (JQR77_07550) ccrZ 1473538..1474329 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  JQR77_RS07540 (JQR77_07555) pptB 1474387..1475421 (-) 1035 WP_372450197.1 ABC transporter permease Regulator
  JQR77_RS07545 (JQR77_07560) pptA 1475421..1476152 (-) 732 WP_023909892.1 ABC transporter ATP-binding protein Regulator
  JQR77_RS07550 (JQR77_07565) - 1476217..1476636 (+) 420 WP_014621894.1 HIT family protein -
  JQR77_RS07555 (JQR77_07570) - 1476633..1476932 (+) 300 WP_014621895.1 hypothetical protein -
  JQR77_RS07560 (JQR77_07575) - 1476984..1477712 (-) 729 WP_023909893.1 hypothetical protein -
  JQR77_RS07565 (JQR77_07580) - 1477730..1478365 (-) 636 WP_023909894.1 DUF4230 domain-containing protein -
  JQR77_RS07570 - 1478384..1478509 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40089.57 Da        Isoelectric Point: 10.6158

>NTDB_id=533221 JQR77_RS07540 WP_372450197.1 1474387..1475421(-) (pptB) [Streptococcus thermophilus strain EG007]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCFLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTVLKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=533221 JQR77_RS07540 WP_372450197.1 1474387..1475421(-) (pptB) [Streptococcus thermophilus strain EG007]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACCACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTTTTTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAGATT
TTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAACATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGTGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.547

100

0.985

  pptB Streptococcus salivarius strain HSISS4

93.023

100

0.93