Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   JQR77_RS07545 Genome accession   NZ_CP069275
Coordinates   1475421..1476152 (-) Length   243 a.a.
NCBI ID   WP_023909892.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EG007     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1470421..1481152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQR77_RS07520 (JQR77_07535) - 1471470..1472651 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  JQR77_RS07530 (JQR77_07545) trmB 1472887..1473528 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  JQR77_RS07535 (JQR77_07550) ccrZ 1473538..1474329 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  JQR77_RS07540 (JQR77_07555) pptB 1474387..1475421 (-) 1035 WP_372450197.1 ABC transporter permease Regulator
  JQR77_RS07545 (JQR77_07560) pptA 1475421..1476152 (-) 732 WP_023909892.1 ABC transporter ATP-binding protein Regulator
  JQR77_RS07550 (JQR77_07565) - 1476217..1476636 (+) 420 WP_014621894.1 HIT family protein -
  JQR77_RS07555 (JQR77_07570) - 1476633..1476932 (+) 300 WP_014621895.1 hypothetical protein -
  JQR77_RS07560 (JQR77_07575) - 1476984..1477712 (-) 729 WP_023909893.1 hypothetical protein -
  JQR77_RS07565 (JQR77_07580) - 1477730..1478365 (-) 636 WP_023909894.1 DUF4230 domain-containing protein -
  JQR77_RS07570 - 1478384..1478509 (-) 126 WP_011681534.1 hypothetical protein -
  JQR77_RS07575 (JQR77_07585) - 1478917..1481016 (-) 2100 WP_011681535.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26796.97 Da        Isoelectric Point: 4.4600

>NTDB_id=533222 JQR77_RS07545 WP_023909892.1 1475421..1476152(-) (pptA) [Streptococcus thermophilus strain EG007]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMAHADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQVLAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=533222 JQR77_RS07545 WP_023909892.1 1475421..1476152(-) (pptA) [Streptococcus thermophilus strain EG007]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTACCGTCAAAAGATTGGCTACATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACTGTGCTTATGGCATATGGCCTTGATGTTAC
AGAAGGAATGGCACATGCAGACAAGTACCTCAAACTTTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGCGCCTTTATTGTCAACCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGTTTTGTGATTTTGCACCATGGACAGGTCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

99.177

100

0.992
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971