Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JQC90_RS11670 Genome accession   NZ_CP069219
Coordinates   2455905..2456414 (-) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain Z0118SE0272     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2449351..2455435 2455905..2456414 flank 470


Gene organization within MGE regions


Location: 2449351..2456414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC90_RS11630 - 2449351..2451060 (+) 1710 WP_001830915.1 IS1182-like element ISSep1 family transposase -
  JQC90_RS11635 - 2451163..2451540 (+) 378 WP_001830923.1 hypothetical protein -
  JQC90_RS11640 - 2451956..2452546 (-) 591 WP_001830925.1 histidine phosphatase family protein -
  JQC90_RS11645 - 2452567..2453199 (-) 633 WP_001830914.1 LysE family translocator -
  JQC90_RS12350 - 2453362..2453451 (+) 90 Protein_2261 hypothetical protein -
  JQC90_RS11650 - 2453673..2453927 (-) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  JQC90_RS11655 - 2454149..2454409 (+) 261 WP_001830921.1 hypothetical protein -
  JQC90_RS12355 - 2454523..2454686 (+) 164 Protein_2264 XRE family transcriptional regulator -
  JQC90_RS11660 tnpA 2454953..2455435 (-) 483 WP_001832528.1 IS200/IS605-like element ISSep3 family transposase -
  JQC90_RS11665 rpsR 2455618..2455860 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  JQC90_RS11670 ssbA 2455905..2456414 (-) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=533079 JQC90_RS11670 WP_001831333.1 2455905..2456414(-) (ssbA) [Staphylococcus epidermidis strain Z0118SE0272]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=533079 JQC90_RS11670 WP_001831333.1 2455905..2456414(-) (ssbA) [Staphylococcus epidermidis strain Z0118SE0272]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379