Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JQC88_RS03990 Genome accession   NZ_CP069215
Coordinates   856992..857708 (-) Length   238 a.a.
NCBI ID   WP_001829999.1    Uniprot ID   C0LF82
Organism   Staphylococcus epidermidis strain Z0118SE0269     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 851992..862708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC88_RS03975 - 853273..854226 (+) 954 WP_001830022.1 LacI family DNA-binding transcriptional regulator -
  JQC88_RS03980 - 854486..855958 (+) 1473 WP_001830011.1 sucrose-6-phosphate hydrolase -
  JQC88_RS03985 - 855965..856924 (+) 960 WP_002468351.1 carbohydrate kinase -
  JQC88_RS03990 agrA 856992..857708 (-) 717 WP_001829999.1 LytTR family DNA-binding domain-containing protein Regulator
  JQC88_RS03995 - 857725..859014 (-) 1290 WP_002495230.1 GHKL domain-containing protein -
  JQC88_RS04000 - 859039..859179 (-) 141 WP_002468352.1 cyclic lactone autoinducer peptide -
  JQC88_RS04005 - 859185..859748 (-) 564 WP_002502970.1 accessory gene regulator AgrB -
  JQC88_RS04010 hld 860065..860142 (+) 78 WP_002494082.1 delta-hemolysin -
  JQC88_RS04015 - 860523..861308 (-) 786 WP_203263055.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27936.97 Da        Isoelectric Point: 5.6250

>NTDB_id=533017 JQC88_RS03990 WP_001829999.1 856992..857708(-) (agrA) [Staphylococcus epidermidis strain Z0118SE0269]
MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELALATNDPYEVLEQSKELNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=533017 JQC88_RS03990 WP_001829999.1 856992..857708(-) (agrA) [Staphylococcus epidermidis strain Z0118SE0269]
ATGAAAATTTTTGTTTGTGAAGATGACCAAAGACAAAGAGAACATATGGTATCAATCATTAAAAACTACATAATGATTGA
AGAAAAGCCAATGGAGTTAGCTTTAGCAACAAATGATCCTTATGAGGTCTTAGAGCAATCAAAAGAACTTAATGACATTG
GTTGTTACTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAATTAGCCAGTGAAATTCGTAAACATGATCCT
GTTGGTAATATTATATTTGTAACCAGTCACAGTGAGCTGACTTATTTGACGTTTGTTTATAAAGTGGCTGCTATGGATTT
TATTTTTAAAGATGATCCATCTGAATTAAAAATGAGAATCATAGATTGTCTTGAAACAGCACACACACGACTCAAATTAT
TATCAAAAGAAAGTAATGTAGATACGATTGAGTTAAAGCGGGGAAGTAATTCAGTATACGTTCAATATGATGATATTATG
TTTTTTGAATCATCTACGAAATCTCATAGACTCATTGCACATCTTGATAATCGACAAATTGAATTTTATGGAAATTTAAA
GGAATTAGCACAGCTTGATGAACGTTTCTTTAGATGTCATAACAGTTTTGTAATAAACAGGCATAATATTGAATCTATTG
ACTCAAAAGAACGTATTGTTTACTTTAAGAATGGCGAAAATTGTTTCGCTTCAGTACGTAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0LF82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878
  comE/comE2 Streptococcus gordonii strain NCTC7865

35.178

100

0.374
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

35.178

100

0.374