Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   JOS67_RS10110 Genome accession   NZ_CP069195
Coordinates   2111868..2114126 (-) Length   752 a.a.
NCBI ID   WP_203346502.1    Uniprot ID   A0AA92LVW5
Organism   Vibrio diabolicus strain SLV18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2106868..2119126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS10090 (JOS67_10085) kdsB 2108160..2108915 (-) 756 WP_203346500.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JOS67_RS10095 (JOS67_10090) - 2108915..2109094 (-) 180 WP_005390649.1 Trm112 family protein -
  JOS67_RS10100 (JOS67_10095) lpxK 2109075..2110082 (-) 1008 WP_203346501.1 tetraacyldisaccharide 4'-kinase -
  JOS67_RS10105 (JOS67_10100) msbA 2110088..2111836 (-) 1749 WP_005390646.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  JOS67_RS10110 (JOS67_10105) comEC 2111868..2114126 (-) 2259 WP_203346502.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JOS67_RS10115 (JOS67_10110) - 2114135..2114644 (+) 510 WP_005390643.1 DUF2062 domain-containing protein -
  JOS67_RS10120 (JOS67_10115) lolE 2114793..2116037 (-) 1245 WP_203346503.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  JOS67_RS10125 (JOS67_10120) lolD 2116040..2116747 (-) 708 WP_005378457.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  JOS67_RS10130 (JOS67_10125) lolC 2116740..2117948 (-) 1209 WP_167426758.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  JOS67_RS10135 (JOS67_10130) - 2118198..2118767 (+) 570 WP_006742154.1 hypothetical protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84394.24 Da        Isoelectric Point: 8.1795

>NTDB_id=532834 JOS67_RS10110 WP_203346502.1 2111868..2114126(-) (comEC) [Vibrio diabolicus strain SLV18]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVALKKVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSVSLKTITGLRNEAGFDAEKHAM
GKSIIARGVVNKDVTWIIRSTTSLRQAIIADVSEDVSSLHHFSLINALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGAIRYALPQYQLLPSLCGLMFAVAYAWLADFSLPTTRAVSVCVIYVVLKYTLVHWASWRVLLLAVALQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQNGGWKAKLKVLLLTQLMLSVLIVPISGYYFSGFSLSSIAYNLAFIPWF
GFIVVPLTFLALFSSLFLEMIAKSLWQLVDWSLQPLSTSIQYAIGSWQPISIEMTGLILAGIVCLVFQRFMFQYAWCLLL
GIVISIKLTSEYDQQHWRIDVLDVGHGLAVIVEKDDKVLLYDTGKAWQNGSIAEQVVTPVLHQRGYESIDTMILSHSDND
HAGGRLFIEDAFSPQRKLSSQNFIGYESCTRGDHWKWQGLNIEVLWPPALVQRAYNPHSCVLRLTDPISTFSMLFTGDIE
TISEWILLREPEKLKSDVMLVPHHGSKSSSNPRFIEAVNPSVAVASLAKNNQWGMPAEHVVAAYRKLDITWLDTGEYGQV
SFSIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=532834 JOS67_RS10110 WP_203346502.1 2111868..2114126(-) (comEC) [Vibrio diabolicus strain SLV18]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATTTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGCATTGTGGCTCTAAAAAA
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCGTCTCGTTAAAGACGATTACAGGCCTACGCAACGAAGCTGGTTTTGATGCCGAAAAGCACGCAATG
GGTAAAAGCATTATCGCACGCGGTGTTGTTAACAAGGATGTTACCTGGATCATTCGCTCTACTACATCTTTGCGCCAAGC
AATTATCGCTGATGTTTCGGAGGATGTGTCCTCCCTTCATCATTTCTCGTTAATAAATGCGTTAGTTTTTGCCGATCGCT
CTTGGTTATCTAAGGAGGATTGGCAAGCACTCAGAGACAGTGGTTTACTGCACTTGGTCTCGATTTCGGGCTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTGGTGGGCGGTGCCATTCGTTATGCGTTACCTCAATACCAGCTATTGCCTAGCTT
ATGTGGGCTGATGTTTGCCGTTGCCTATGCGTGGTTAGCGGACTTCTCATTACCTACTACCCGCGCGGTGTCGGTATGTG
TTATTTACGTCGTTCTCAAATATACCTTAGTGCACTGGGCTTCCTGGCGGGTACTTTTGCTCGCGGTAGCGCTACAACTG
CTTGTTCAACCTTTTGCATCGTATAGCATGAGTTTTTGGTTATCGTATTTGTCAGTTTGCGCAGTGTTGTTCGCAATCAA
TTTGATTCGGCATCAAAACGGGGGCTGGAAGGCGAAGTTAAAAGTGCTATTGCTTACTCAATTGATGTTGAGTGTGTTAA
TCGTGCCTATTAGTGGCTATTACTTTTCTGGTTTCAGTTTGTCATCAATTGCATACAACTTGGCGTTTATTCCTTGGTTC
GGATTTATCGTTGTGCCTTTGACGTTTCTGGCCCTGTTCTCATCTTTATTTCTTGAAATGATAGCAAAGTCTCTGTGGCA
GTTGGTGGACTGGTCATTGCAGCCATTGAGCACGTCAATACAGTACGCGATAGGCTCCTGGCAACCCATTAGTATAGAAA
TGACAGGGTTGATTCTGGCGGGAATTGTTTGCTTGGTGTTTCAACGATTCATGTTTCAGTACGCGTGGTGTTTGTTACTT
GGCATTGTAATTAGTATTAAGCTCACATCGGAATATGATCAGCAACATTGGCGCATTGATGTACTAGATGTGGGCCATGG
CCTTGCGGTGATTGTAGAAAAAGACGATAAAGTGTTGCTCTATGATACAGGTAAAGCATGGCAAAATGGCAGCATTGCGG
AGCAGGTCGTCACTCCGGTCTTGCATCAACGAGGTTATGAAAGCATCGATACGATGATCCTCAGCCATTCCGACAATGAC
CATGCAGGAGGGCGCTTGTTCATTGAAGATGCCTTTTCGCCACAGCGCAAACTCAGTAGCCAAAACTTTATCGGATATGA
GTCTTGTACTCGCGGCGATCATTGGAAATGGCAAGGGTTAAATATAGAAGTACTTTGGCCTCCTGCTCTTGTTCAACGTG
CATATAATCCGCACTCCTGTGTACTACGTCTTACCGACCCTATTTCTACGTTCAGTATGCTTTTTACTGGTGATATTGAG
ACCATTAGCGAGTGGATCTTGCTCAGGGAGCCTGAAAAGTTAAAAAGTGATGTGATGTTGGTCCCTCATCATGGTAGTAA
AAGTTCGTCGAATCCTCGCTTTATTGAAGCGGTAAACCCGAGTGTGGCCGTTGCTTCTTTGGCAAAAAATAATCAATGGG
GAATGCCGGCAGAACATGTTGTTGCAGCATATCGCAAGCTTGACATTACTTGGCTTGATACTGGGGAATATGGTCAGGTA
AGCTTCTCTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

70.479

100

0.705
  comEC Vibrio campbellii strain DS40M4

65.559

100

0.656
  comEC Vibrio cholerae strain A1552

41.987

100

0.422