Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LA372_RS05760 Genome accession   NZ_CP083585
Coordinates   1161632..1162369 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ECNB21-M121     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1156632..1167369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA372_RS05735 (LA372_05735) tyrA 1157006..1158127 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LA372_RS05740 (LA372_05740) pheA 1158170..1159330 (-) 1161 WP_047624103.1 bifunctional chorismate mutase/prephenate dehydratase -
  LA372_RS05745 (LA372_05745) pheL 1159429..1159476 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LA372_RS05750 (LA372_05750) raiA 1159580..1159921 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LA372_RS05755 (LA372_05755) - 1160182..1161510 (-) 1329 WP_224204900.1 IS4-like element IS4 family transposase -
  LA372_RS05760 (LA372_05760) comL 1161632..1162369 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LA372_RS05765 (LA372_05765) rluD 1162504..1163484 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LA372_RS05770 (LA372_05770) yfiH 1163481..1164212 (+) 732 WP_047623456.1 purine nucleoside phosphorylase YfiH -
  LA372_RS05775 (LA372_05775) clpC 1164342..1166915 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=532729 LA372_RS05760 WP_000197686.1 1161632..1162369(-) (comL) [Escherichia coli strain ECNB21-M121]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=532729 LA372_RS05760 WP_000197686.1 1161632..1162369(-) (comL) [Escherichia coli strain ECNB21-M121]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCAAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376