Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LBUCD034_RS00050 Genome accession   NC_018610
Coordinates   11602..12168 (+) Length   188 a.a.
NCBI ID   WP_014939036.1    Uniprot ID   -
Organism   Lentilactobacillus buchneri subsp. silagei CD034     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6602..17168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBUCD034_RS00030 (LBUCD034_0006) gyrA 6609..9176 (+) 2568 WP_044502567.1 DNA gyrase subunit A -
  LBUCD034_RS00035 (LBUCD034_0007) - 9363..10472 (+) 1110 WP_014939034.1 lactate oxidase -
  LBUCD034_RS00040 (LBUCD034_0008) - 10678..10869 (-) 192 WP_014939035.1 hypothetical protein -
  LBUCD034_RS00045 (LBUCD034_0009) rpsF 11271..11567 (+) 297 WP_013726867.1 30S ribosomal protein S6 -
  LBUCD034_RS00050 (LBUCD034_0010) ssb 11602..12168 (+) 567 WP_014939036.1 single-stranded DNA-binding protein Machinery gene
  LBUCD034_RS00055 (LBUCD034_0011) rpsR 12205..12444 (+) 240 WP_013726869.1 30S ribosomal protein S18 -
  LBUCD034_RS00060 (LBUCD034_0012) nhaC 12546..13961 (-) 1416 WP_014939037.1 Na+/H+ antiporter NhaC -
  LBUCD034_RS00065 (LBUCD034_0013) - 14592..15983 (+) 1392 WP_014939038.1 amino acid permease -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20308.57 Da        Isoelectric Point: 4.7146

>NTDB_id=53256 LBUCD034_RS00050 WP_014939036.1 11602..12168(+) (ssb) [Lentilactobacillus buchneri subsp. silagei CD034]
MLNRAVLTGRLTRDVDLRYTQSGTAVGSFSLAVDRQFTNQQGEREADFINCVIWRKSAENFANFVHKGSLVGIDGRIQTR
NYENAQGQRVYVTEVVVENFALLEPRSARNNSNGQQNGNAPQQNNGNANTFDNHSNAGTGNSGNSNNNGGNNPTNNGGNN
GNNGNNNPNDPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=53256 LBUCD034_RS00050 WP_014939036.1 11602..12168(+) (ssb) [Lentilactobacillus buchneri subsp. silagei CD034]
ATGCTTAATCGTGCAGTTCTTACGGGTCGCCTAACCCGCGATGTTGATTTACGATACACTCAAAGCGGAACCGCTGTCGG
TTCGTTCTCACTTGCCGTTGATCGGCAATTTACCAATCAACAGGGGGAACGAGAGGCTGATTTCATTAACTGCGTAATCT
GGCGTAAATCCGCTGAAAACTTTGCCAACTTCGTTCATAAGGGGTCGCTTGTTGGAATTGATGGTCGTATTCAGACCAGA
AATTACGAAAACGCACAGGGACAACGTGTTTATGTGACCGAAGTTGTAGTAGAGAATTTTGCGCTGCTTGAGCCCCGTTC
TGCAAGGAACAACTCAAATGGTCAGCAAAATGGCAATGCTCCTCAACAAAATAACGGTAATGCCAATACATTTGATAATC
ATTCAAATGCCGGTACCGGTAATAGTGGCAATTCCAACAATAATGGCGGGAATAATCCTACTAACAATGGTGGAAATAAC
GGTAATAACGGGAACAATAATCCCAATGATCCGTTCGCTAACTCTGGGGACTCGATTGACATTTCCGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.905

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.255

100

0.543

Multiple sequence alignment