Detailed information NTG0532350

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: JNE42_RS16670
• Genome accession: NZ_CP069098
• Coordinates: 3216312..3217487 (-)
• Length: 391 a.a.
• NCBI ID: WP_024719243.1
• Uniprot ID: A0A081LEM4
• Organism: Bacillus altitudinis strain 63-2-2
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3211312..3222487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNE42_RS16640 (JNE42_16640)	-	3211488..3211907 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
JNE42_RS16645 (JNE42_16645)	-	3211964..3212686 (-)	723	WP_373870389.1	ComF family protein	-
JNE42_RS16650 (JNE42_16650)	-	3212647..3212940 (-)	294	WP_008348267.1	late competence development ComFB family protein	-
JNE42_RS16655 (JNE42_16655)	comFA	3213005..3214384 (-)	1380	WP_203144413.1	DEAD/DEAH box helicase	Machinery gene
JNE42_RS16660 (JNE42_16660)	-	3214504..3215346 (-)	843	WP_024719242.1	DegV family protein	-
JNE42_RS16665 (JNE42_16665)	degU	3215558..3216247 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
JNE42_RS16670 (JNE42_16670)	degS	3216312..3217487 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator
JNE42_RS16675 (JNE42_16675)	-	3217709..3218377 (+)	669	WP_017357860.1	YigZ family protein	-
JNE42_RS16680 (JNE42_16680)	-	3218362..3219459 (+)	1098	Protein_3247	LCP family protein	-
JNE42_RS16685 (JNE42_16685)	-	3219497..3220564 (-)	1068	WP_024719245.1	glycosyltransferase family 4 protein	-
JNE42_RS16690 (JNE42_16690)	tuaH	3220699..3221895 (-)	1197	WP_041508115.1	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45550.27 Da
• Isoelectric Point: 5.8757

>NTDB_id=532350 JNE42_RS16670 WP_024719243.1 3216312..3217487(-) (degS) [Bacillus altitudinis strain 63-2-2]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTENERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=532350 JNE42_RS16670 WP_024719243.1 3216312..3217487(-) (degS) [Bacillus altitudinis strain 63-2-2]
ATGACAACACCTAAAATGGATCCGAAGTTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGTAAGGA
CGAAGTATTTAGAATCGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTCAAGCAAATTAAACAGCAAG
TCAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTACATACGAGACATGCTAGAAATCGATTATCTGAGGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGAGAAGCCTATGAAAAAGCACATAACCTGCAAGTAGAATTGACCATGAT
CCAGCAGCGCGAAAAACAGCTGAGGGAAAGAAGAGATGATCTCGAAAGACGATTGTTAAGCTTACAAGATGTCATTGAAC
GTTCAGAAACGCTTGTGAGCCAGATCACGGTCGTTCTCAACTACTTGAACCAAGATTTACGTCAGGTCGGTGTTTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAGGAAGAAGAGCGCAAAAGGGTATCACGAGA
AATCCATGATGGACCTGCTCAGATGCTGGCAAACGTGATGATGCGTTCAGAACTAATTGAACGAATTTTTAGAGACCGTG
GAACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTAAGACAGAATGTGCGAAATGCACTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGTCTCATTCCGACACTGCGAAAATACTTAAACACAATTGAAGAATA
TGATGGAAAAACCAAAATTACGTTCCAATGCCTAGGGGATACAGAAAATGAAAGAATTGCTTCTCAGTTCGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCTTTAAAGCATTCTGAAGCTGAAGAAATCTCTGTGAAGGTTGAAGTG
ACGAAAGACTTTGTCACCTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAGGATGTTAAAACAAATAAAAACAA
ATCCTTTGGGTTACTTGGTATGAAAGAGCGCGTAGACTTGCTAGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTAGAGTACCGTTAACATTACAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A0A081LEM4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841