Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JNE42_RS16655 Genome accession   NZ_CP069098
Coordinates   3213005..3214384 (-) Length   459 a.a.
NCBI ID   WP_203144413.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 63-2-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3208005..3219384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS16620 (JNE42_16620) flgL 3208188..3209099 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  JNE42_RS16625 (JNE42_16625) flgK 3209108..3210628 (-) 1521 WP_024719239.1 flagellar hook-associated protein FlgK -
  JNE42_RS16630 (JNE42_16630) - 3210644..3211126 (-) 483 WP_007499977.1 flagellar protein FlgN -
  JNE42_RS16635 (JNE42_16635) flgM 3211145..3211408 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  JNE42_RS16640 (JNE42_16640) - 3211488..3211907 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  JNE42_RS16645 (JNE42_16645) - 3211964..3212686 (-) 723 WP_373870389.1 ComF family protein -
  JNE42_RS16650 (JNE42_16650) - 3212647..3212940 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  JNE42_RS16655 (JNE42_16655) comFA 3213005..3214384 (-) 1380 WP_203144413.1 DEAD/DEAH box helicase Machinery gene
  JNE42_RS16660 (JNE42_16660) - 3214504..3215346 (-) 843 WP_024719242.1 DegV family protein -
  JNE42_RS16665 (JNE42_16665) degU 3215558..3216247 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JNE42_RS16670 (JNE42_16670) degS 3216312..3217487 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  JNE42_RS16675 (JNE42_16675) - 3217709..3218377 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52543.14 Da        Isoelectric Point: 9.9128

>NTDB_id=532348 JNE42_RS16655 WP_203144413.1 3213005..3214384(-) (comFA) [Bacillus altitudinis strain 63-2-2]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVDRLASGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEEEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=532348 JNE42_RS16655 WP_203144413.1 3213005..3214384(-) (comFA) [Bacillus altitudinis strain 63-2-2]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCTGTCGATAGGTTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACGAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTGGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGTGGGAGTTCTCAAAGGTTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTACCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACGATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAG
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.36

96.95

0.508