Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JNE42_RS16665 Genome accession   NZ_CP069098
Coordinates   3215558..3216247 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain 63-2-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3210558..3221247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS16630 (JNE42_16630) - 3210644..3211126 (-) 483 WP_007499977.1 flagellar protein FlgN -
  JNE42_RS16635 (JNE42_16635) flgM 3211145..3211408 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  JNE42_RS16640 (JNE42_16640) - 3211488..3211907 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  JNE42_RS16645 (JNE42_16645) - 3211964..3212686 (-) 723 WP_373870389.1 ComF family protein -
  JNE42_RS16650 (JNE42_16650) - 3212647..3212940 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  JNE42_RS16655 (JNE42_16655) comFA 3213005..3214384 (-) 1380 WP_203144413.1 DEAD/DEAH box helicase Machinery gene
  JNE42_RS16660 (JNE42_16660) - 3214504..3215346 (-) 843 WP_024719242.1 DegV family protein -
  JNE42_RS16665 (JNE42_16665) degU 3215558..3216247 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JNE42_RS16670 (JNE42_16670) degS 3216312..3217487 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  JNE42_RS16675 (JNE42_16675) - 3217709..3218377 (+) 669 WP_017357860.1 YigZ family protein -
  JNE42_RS16680 (JNE42_16680) - 3218362..3219459 (+) 1098 Protein_3247 LCP family protein -
  JNE42_RS16685 (JNE42_16685) - 3219497..3220564 (-) 1068 WP_024719245.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=532349 JNE42_RS16665 WP_008348273.1 3215558..3216247(-) (degU) [Bacillus altitudinis strain 63-2-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=532349 JNE42_RS16665 WP_008348273.1 3215558..3216247(-) (degU) [Bacillus altitudinis strain 63-2-2]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATTTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996