Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JN168_RS06595 Genome accession   NZ_CP069082
Coordinates   1402321..1402638 (+) Length   105 a.a.
NCBI ID   WP_042738587.1    Uniprot ID   A0A0D0QX55
Organism   Staphylococcus gallinarum strain STP534     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1397321..1407638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN168_RS06565 - 1398084..1398281 (+) 198 WP_042739023.1 YqgQ family protein -
  JN168_RS06570 - 1398286..1399272 (+) 987 WP_279526248.1 ROK family glucokinase -
  JN168_RS06575 - 1399272..1399595 (+) 324 WP_042738585.1 MTH1187 family thiamine-binding protein -
  JN168_RS06580 - 1399597..1400220 (+) 624 WP_279526249.1 MBL fold metallo-hydrolase -
  JN168_RS06585 comGA 1400288..1401262 (+) 975 WP_229367240.1 competence type IV pilus ATPase ComGA Machinery gene
  JN168_RS06590 comGB 1401234..1402301 (+) 1068 WP_279526250.1 competence type IV pilus assembly protein ComGB -
  JN168_RS06595 comGC 1402321..1402638 (+) 318 WP_042738587.1 competence type IV pilus major pilin ComGC Machinery gene
  JN168_RS06600 comGD 1402616..1403062 (+) 447 WP_042738588.1 competence type IV pilus minor pilin ComGD -
  JN168_RS06605 - 1403320..1403760 (+) 441 WP_042738589.1 competence type IV pilus minor pilin ComGF -
  JN168_RS06610 - 1403967..1404440 (+) 474 WP_279526270.1 shikimate kinase -
  JN168_RS06615 gcvT 1404610..1405701 (+) 1092 WP_279526251.1 glycine cleavage system aminomethyltransferase GcvT -
  JN168_RS06620 gcvPA 1405717..1407069 (+) 1353 WP_279526252.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11857.90 Da        Isoelectric Point: 7.7725

>NTDB_id=532245 JN168_RS06595 WP_042738587.1 1402321..1402638(+) (comGC) [Staphylococcus gallinarum strain STP534]
MYKQPKFNYKDAFTLIEMLLVLLIISLLLILIIPNISKQSKSIQETGCEAQLKMVDSQIEAFALKYNKNPDSIDDLIQKG
YLKENQKYCKSGATITINNGEAIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=532245 JN168_RS06595 WP_042738587.1 1402321..1402638(+) (comGC) [Staphylococcus gallinarum strain STP534]
ATGTATAAACAACCGAAATTTAACTATAAAGATGCTTTCACTTTAATTGAAATGCTTTTAGTTTTATTAATCATAAGTTT
ATTACTTATATTAATCATTCCAAATATATCAAAACAATCTAAATCCATACAGGAAACAGGATGTGAAGCGCAATTAAAAA
TGGTAGATAGTCAAATTGAAGCTTTCGCATTAAAATATAATAAAAATCCAGACTCTATTGACGATTTAATTCAAAAAGGA
TATTTAAAAGAAAATCAAAAATATTGTAAATCTGGTGCAACAATTACTATAAATAATGGTGAAGCTATTGCCAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0QX55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

76.596

89.524

0.686
  comGC Staphylococcus aureus N315

76.596

89.524

0.686
  comGC Bacillus subtilis subsp. subtilis str. 168

44.444

85.714

0.381
  comGC/cglC Streptococcus mitis SK321

43.333

85.714

0.371