Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   JOA01_RS02910 Genome accession   NZ_CP069079
Coordinates   569839..570840 (+) Length   333 a.a.
NCBI ID   WP_217375145.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 564839..575840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS02895 (JOA01_02900) - 566059..566916 (-) 858 WP_217374811.1 DUF975 family protein -
  JOA01_RS02900 (JOA01_02905) tgt 567184..568326 (+) 1143 WP_217374812.1 tRNA guanosine(34) transglycosylase Tgt -
  JOA01_RS02905 (JOA01_02910) - 568548..569633 (-) 1086 WP_217374813.1 Xaa-Pro peptidase family protein -
  JOA01_RS02910 (JOA01_02915) ccpA 569839..570840 (+) 1002 WP_217375145.1 catabolite control protein A Regulator
  JOA01_RS02915 (JOA01_02920) - 570957..572000 (+) 1044 WP_217374814.1 glycosyltransferase family 4 protein -
  JOA01_RS02920 (JOA01_02925) - 572021..573334 (+) 1314 WP_217374815.1 glycosyltransferase family 4 protein -
  JOA01_RS02925 (JOA01_02930) - 573349..573723 (+) 375 WP_217374816.1 hypothetical protein -
  JOA01_RS09900 - 573987..574358 (+) 372 Protein_544 MazG-like protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36790.81 Da        Isoelectric Point: 5.5299

>NTDB_id=532163 JOA01_RS02910 WP_217375145.1 569839..570840(+) (ccpA) [Streptococcus parasuis strain BS26]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANVYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASSDAVKLLAKNNKKIAFVSGPLVDDINGKIRFSGYKEGLQANGLEFNEGLVFESKYKYEEGYALAERVLNAG
ATAAYVAEDEIAAGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=532163 JOA01_RS02910 WP_217375145.1 569839..570840(+) (ccpA) [Streptococcus parasuis strain BS26]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAAGAAAACACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGCCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACGACAACTGTGGGGGTTGTGATTCCAAATATTGCCAATGTCTATTTTGCA
ACCTTGGCTAAGGGAATTGATGACATTGCTGATATGTATAAGTATAATATCGTATTGGCAAACAGTGATGAAAATGACGA
GAAAGAAATTAATGTTGTCAATACATTGTTTTCTAAGCAAGTTGATGGTATTATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCGGAATTTTCACGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAGCTGCAAGTAGTGATGCAGTAAAATTGCTTGCTAAAAATAACAAAAAAATCGCCTTTGTTTC
AGGTCCATTGGTTGATGACATCAATGGGAAAATTCGTTTTTCTGGTTACAAAGAAGGACTCCAAGCGAATGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGCCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATGTCGCTGAAGATGAAATCGCTGCCGGTTTGTTAAATGGTATTAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CGATTTACGATATTGGCGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

100

0.796
  ccpA Streptococcus pneumoniae D39

78.979

100

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.61

99.399

0.583