Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JOA01_RS01870 Genome accession   NZ_CP069079
Coordinates   363201..363695 (+) Length   164 a.a.
NCBI ID   WP_171989336.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 358201..368695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS01840 (JOA01_01840) trpA 358233..359039 (+) 807 WP_217374664.1 tryptophan synthase subunit alpha -
  JOA01_RS01845 (JOA01_01845) - 359446..360294 (+) 849 WP_217374665.1 HAD family hydrolase -
  JOA01_RS01850 (JOA01_01850) - 360452..360784 (+) 333 Protein_327 CAT RNA binding domain-containing protein -
  JOA01_RS01855 (JOA01_01855) - 360845..361684 (+) 840 Protein_328 family 1 glycosylhydrolase -
  JOA01_RS01860 (JOA01_01860) - 361768..362757 (+) 990 WP_217374666.1 lipoate--protein ligase -
  JOA01_RS01865 (JOA01_01865) rpsF 362899..363189 (+) 291 WP_171989335.1 30S ribosomal protein S6 -
  JOA01_RS01870 (JOA01_01870) ssb 363201..363695 (+) 495 WP_171989336.1 single-stranded DNA-binding protein Machinery gene
  JOA01_RS01875 (JOA01_01875) rpsR 363728..363967 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  JOA01_RS01880 (JOA01_01880) - 364424..365080 (-) 657 WP_217374667.1 DUF1129 domain-containing protein -
  JOA01_RS01885 (JOA01_01885) - 365096..366040 (-) 945 WP_024391538.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18129.89 Da        Isoelectric Point: 4.7294

>NTDB_id=532159 JOA01_RS01870 WP_171989336.1 363201..363695(+) (ssb) [Streptococcus parasuis strain BS26]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGANNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=532159 JOA01_RS01870 WP_171989336.1 363201..363695(+) (ssb) [Streptococcus parasuis strain BS26]
ATGATTAATAATGTAGTATTGGTTGGTCGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAACGTGAAGCGGACTTTATTAACGTAGTCATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAAAAAGGTGCGCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGATAACCAACAGGGGCAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTATTGGAAAGCCGTAC
TGCCCGTGAAGGCCAAGGGGGCGGTTATTCAGCTGGTAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAACAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366