Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LAE75_RS02280 Genome accession   NZ_CP083378
Coordinates   392821..394794 (+) Length   657 a.a.
NCBI ID   WP_052784739.1    Uniprot ID   -
Organism   Campylobacter coli strain C203112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 387821..399794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE75_RS02250 (LAE75_02210) flgH 388009..388707 (+) 699 WP_002793310.1 flagellar basal body L-ring protein FlgH -
  LAE75_RS02255 (LAE75_02215) ispG 388791..389864 (-) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  LAE75_RS02260 (LAE75_02220) - 389924..391762 (-) 1839 WP_002787399.1 primosomal protein N' -
  LAE75_RS02265 (LAE75_02225) Cj0683 391759..392205 (-) 447 WP_002776437.1 type II secretion system protein Machinery gene
  LAE75_RS02270 (LAE75_02230) - 392202..392447 (-) 246 WP_002776428.1 hypothetical protein -
  LAE75_RS02275 (LAE75_02235) - 392437..392667 (-) 231 WP_002776426.1 hypothetical protein -
  LAE75_RS02280 (LAE75_02240) uvrB 392821..394794 (+) 1974 WP_052784739.1 excinuclease ABC subunit UvrB Machinery gene
  LAE75_RS02285 (LAE75_02245) - 394829..396253 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  LAE75_RS02290 (LAE75_02250) - 396441..397691 (-) 1251 WP_002781614.1 RNA polymerase factor sigma-54 -
  LAE75_RS02295 (LAE75_02255) lptB 397691..398419 (-) 729 WP_002776419.1 LPS export ABC transporter ATP-binding protein -
  LAE75_RS02300 (LAE75_02260) tsaE 398412..398819 (-) 408 WP_002776418.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LAE75_RS02305 (LAE75_02265) - 398816..399061 (-) 246 WP_002776417.1 RNA-binding S4 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 76004.44 Da        Isoelectric Point: 6.4586

>NTDB_id=531938 LAE75_RS02280 WP_052784739.1 392821..394794(+) (uvrB) [Campylobacter coli strain C203112]
MLELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
DMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKIELNERLAQFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKIEKMPANERAKIVKELRKQMLEAAKALE
FEKAATLRDEINKLKDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=531938 LAE75_RS02280 WP_052784739.1 392821..394794(+) (uvrB) [Campylobacter coli strain C203112]
ATGTTAGAACTTACAAGCGATTTTAAACCAAGTCCTGATCAAGAACAAGCAATACAAGGTATTGTCAAAAGCATAAAAAA
AGGTAATAAATATCAAACCCTACTCGGCGTAACAGGAAGCGGAAAGACTTTTACCATGGCAAATGTCATAAAAGAACTCA
ATATGCCAACCCTTATCATGAGTCATAACAAAAGCCTTTGCGCCCAGCTTTATAGCGAATTTAAAGGTTTTTTTTCTAAG
AACCATGTGGAATATTTTATTTCTTATTATGATTATTATCAGCCTGAAGCTTATATACCGCGCACCGATGTTTTTATAGA
AAAAGATAGCTCCACAAATGAGGATCTAGAACGCTTAAGACTTAGCGCAACTGCTTCGCTTTTAAGCTATGAGGATGTGG
TTTGTATCGCTAGTGTCTCGGCTAATTATGGACTTGGAAATCCAAATGAATACATAGGAATGGTTTTAATCTTTGAACTA
GACATGCAAATTTCACAAAAAGAACTTTTAAAGAAACTTGTAGACATGGGTTATAAAAGAAATGATAATTTCTTTGATCG
TGCTGATTTTCGCGTACAAGGTGATATTATAGATATTTATCCTGCTTATTACGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGTGATGAACTGGATGCAATGTATCATTATAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTT
TATCCTACAAGTCAATTTAGTGTAGGAGAAACTAGATTAAAGCAAGCTATTAAAGATATAAAGATAGAACTTAATGAGCG
TTTGGCACAATTTGAACATGAAAACAAGCTTGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGCGTTGAAAATTATGCTAGACATTTAACAGGGCTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAAATAGGAAATTTCTTGTTATAGTCGATGAAAGCCATGTTTCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTAGATTATGGTTTTCGTCTTCCATCAGCTCTTGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAGATTGTCAGTTTCTTTTTGTTTCAGCCACCCCTGCCCCGCTTGAG
CTTGAACTTAGCAAGGAAAATATCTTTCATCAAATTATGCGTCCAACAGGATTACTTGATCCTTTGATAGAACTTAAAGA
TAGCGATAATCAAGTTGAAATTTTATTTGATGAAGCCAAAAAAGTTATACAAAGAAACGAACGCGTTTTAGTTACTGTGT
TGACTAAAAAACTAGCTGAAGAGCTTACAAGGTATTATTTAGAACTTGGTATTAAAGTAAAATACATGCATTCAGATATT
GATGCAATAGAACGCAATGAAATCATAAGAGGCTTAAGAAGCGGTGCTTTTGATATGTTAATAGGTATAAATTTACTTAG
AGAAGGACTTGATTTGCCTGAGGTTTCGCTTATTGCCATTATGGACGCAGATAAGGAGGGTTTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCTGCTAGAAATGTCAATGGTAAAGTTTTACTCTTTTGCAAAAAGATTACAAAATCC
ATGCAAGAAGCTATGGATACTACAAATGAGCGTCGCAAACTTCAAGAAGCTTACAATCAAAAACATAACATCACCCCAAC
TTCAGTCAAGCGACACATCGAAGAAAGTTTAAAAAATGAAGAAAACTTAGGAGAAATTTATCGCAAAGGTAAAAAAATTG
AAAAAATGCCTGCTAATGAAAGAGCTAAAATCGTAAAAGAGCTTCGTAAACAAATGCTTGAAGCTGCTAAAGCGCTCGAA
TTTGAAAAAGCAGCGACTTTAAGAGATGAGATCAATAAATTAAAAGATTTATAG

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-246)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

UvrB/uvrC motif (UVR)

(623-656)

Ultra-violet resistance protein B (UvrB)

(552-593)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae D39

50.305

99.848

0.502