Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   DI291_RS19005 Genome accession   NZ_CP068988
Coordinates   3751033..3752190 (-) Length   385 a.a.
NCBI ID   WP_020453119.1    Uniprot ID   A0A6I7TVP7
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3746033..3757190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS18975 (DI291_19495) - 3746271..3746690 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  DI291_RS18980 (DI291_19500) comFC 3746749..3747486 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  DI291_RS18985 (DI291_19505) - 3747443..3747727 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  DI291_RS18990 (DI291_19510) comFA 3747782..3749176 (-) 1395 WP_128822151.1 DEAD/DEAH box helicase Machinery gene
  DI291_RS18995 (DI291_19515) - 3749300..3750142 (-) 843 WP_020453118.1 DegV family protein -
  DI291_RS19000 (DI291_19520) degU 3750262..3750951 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  DI291_RS19005 (DI291_19525) degS 3751033..3752190 (-) 1158 WP_020453119.1 histidine kinase Regulator
  DI291_RS19010 (DI291_19530) - 3752413..3753051 (+) 639 WP_020453120.1 YigZ family protein -
  DI291_RS19015 (DI291_19535) - 3753066..3754145 (+) 1080 WP_128822152.1 LCP family protein -
  DI291_RS19020 (DI291_19540) - 3754198..3754566 (-) 369 WP_205802161.1 hypothetical protein -
  DI291_RS19025 (DI291_19545) - 3754676..3755740 (-) 1065 WP_025810697.1 MraY family glycosyltransferase -
  DI291_RS19030 (DI291_19550) - 3755871..3757058 (-) 1188 WP_224066736.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44650.34 Da        Isoelectric Point: 6.7862

>NTDB_id=531873 DI291_RS19005 WP_020453119.1 3751033..3752190(-) (degS) [Bacillus paralicheniformis strain SUBG0010]
MSVSKMDSKVLDSIIMKMLKTVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDRLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEDRRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=531873 DI291_RS19005 WP_020453119.1 3751033..3752190(-) (degS) [Bacillus paralicheniformis strain SUBG0010]
GTGAGTGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAACGGTTGACGGGAGCAAGGA
TGAGGTCTTTCAAATCGGAGAGCAGTCCCGTCAGCAATATGAAGGCTTGGTAGAAGAGCTGAAGCAGATTAAACAGCAGG
TCAACGAAGTCATCGATCTTGGAGACAGGCTGGAAGTGCATGCCCGCCATGCGCGAAACCGCTTGTCTGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTGGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGCCAGATTACCGTCGTCTTAAACTATTTAAATCAGGATCTGCGCCAGGTTGGCGTTCTCCTA
GAAGATGCGCAGGCCAAACAGGATTTCGGACTGCGGATCATCGAAGCCCAAGAGGAAGAAAGAAAAAGGGTCTCAAGGGA
AATCCACGACGGCCCTGCGCAAATGCTGGCCAACGTCATGATGAGATCTGAGCTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAGAAACCTCCGGCAAAACGTCAGAAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGACGATTTGGGATTAATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATCCATTTCCAATGCATCGGAGAATCTGAAGATAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TTTTCCGTCTTGCACAGGAAGCAGTGACAAACGCCTTAAAACACTCCGAATCAACTGAGATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGTTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTTAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGACTTGCTCGAAGGTTCAATGACAATCGATTCGAAAATAGGTCTTG
GGACATTTATTTTGATTAAAGTTCCGCTGTCTTTGTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894