Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DI291_RS19000 Genome accession   NZ_CP068988
Coordinates   3750262..3750951 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3745262..3755951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS18965 (DI291_19485) - 3745430..3745906 (-) 477 WP_128822150.1 flagellar protein FlgN -
  DI291_RS18970 (DI291_19490) flgM 3745925..3746191 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  DI291_RS18975 (DI291_19495) - 3746271..3746690 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  DI291_RS18980 (DI291_19500) comFC 3746749..3747486 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  DI291_RS18985 (DI291_19505) - 3747443..3747727 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  DI291_RS18990 (DI291_19510) comFA 3747782..3749176 (-) 1395 WP_128822151.1 DEAD/DEAH box helicase Machinery gene
  DI291_RS18995 (DI291_19515) - 3749300..3750142 (-) 843 WP_020453118.1 DegV family protein -
  DI291_RS19000 (DI291_19520) degU 3750262..3750951 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  DI291_RS19005 (DI291_19525) degS 3751033..3752190 (-) 1158 WP_020453119.1 histidine kinase Regulator
  DI291_RS19010 (DI291_19530) - 3752413..3753051 (+) 639 WP_020453120.1 YigZ family protein -
  DI291_RS19015 (DI291_19535) - 3753066..3754145 (+) 1080 WP_128822152.1 LCP family protein -
  DI291_RS19020 (DI291_19540) - 3754198..3754566 (-) 369 WP_205802161.1 hypothetical protein -
  DI291_RS19025 (DI291_19545) - 3754676..3755740 (-) 1065 WP_025810697.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=531872 DI291_RS19000 WP_003185730.1 3750262..3750951(-) (degU) [Bacillus paralicheniformis strain SUBG0010]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=531872 DI291_RS19000 WP_003185730.1 3750262..3750951(-) (degU) [Bacillus paralicheniformis strain SUBG0010]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987