Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DI291_RS18990 Genome accession   NZ_CP068988
Coordinates   3747782..3749176 (-) Length   464 a.a.
NCBI ID   WP_128822151.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3742782..3754176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS18955 (DI291_19475) flgL 3742969..3743880 (-) 912 WP_128822149.1 flagellar hook-associated protein FlgL -
  DI291_RS18960 (DI291_19480) flgK 3743891..3745414 (-) 1524 WP_026580173.1 flagellar hook-associated protein FlgK -
  DI291_RS18965 (DI291_19485) - 3745430..3745906 (-) 477 WP_128822150.1 flagellar protein FlgN -
  DI291_RS18970 (DI291_19490) flgM 3745925..3746191 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  DI291_RS18975 (DI291_19495) - 3746271..3746690 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  DI291_RS18980 (DI291_19500) comFC 3746749..3747486 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  DI291_RS18985 (DI291_19505) - 3747443..3747727 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  DI291_RS18990 (DI291_19510) comFA 3747782..3749176 (-) 1395 WP_128822151.1 DEAD/DEAH box helicase Machinery gene
  DI291_RS18995 (DI291_19515) - 3749300..3750142 (-) 843 WP_020453118.1 DegV family protein -
  DI291_RS19000 (DI291_19520) degU 3750262..3750951 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  DI291_RS19005 (DI291_19525) degS 3751033..3752190 (-) 1158 WP_020453119.1 histidine kinase Regulator
  DI291_RS19010 (DI291_19530) - 3752413..3753051 (+) 639 WP_020453120.1 YigZ family protein -
  DI291_RS19015 (DI291_19535) - 3753066..3754145 (+) 1080 WP_128822152.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53044.82 Da        Isoelectric Point: 9.7663

>NTDB_id=531871 DI291_RS18990 WP_128822151.1 3747782..3749176(-) (comFA) [Bacillus paralicheniformis strain SUBG0010]
MIHIEHPASYSCELRSCLEQRHLLKSELPFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACVMMGRVSECTSLLTWRGHGRHEWAPVYTEWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGMEIAALYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLHTVRIPARFHRSPLPEPTLIWCGNWERGLKRRKVPLRLK
KWLFKHQELQHPVFLFVPSIPVLKTVVSLLKKETFRAEGVYAEDPERNEKVNRFRKSKLEVLVTTTILERGVTVKKAQVG
VLGAEAAVFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKSMNAARRHIQYMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=531871 DI291_RS18990 WP_128822151.1 3747782..3749176(-) (comFA) [Bacillus paralicheniformis strain SUBG0010]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTGTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGATGGAAATCGCCGCTTTATACGGAGGAAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAAGTGGATGCTTTTCCG
TATTCAATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTCCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTTACGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTCTGTTTGTTCCCTCTATCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCAGAAGGAGTCTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGAAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGTGTAACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGGCGGCTGTTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGCAGAGCCGGCAGGCATCCTGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGTAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAATATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-270)

Helicase conserved C-terminal domain (Helicase_C)

(318-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.987

98.707

0.563