Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   FLI66_RS29560 Genome accession   NZ_CP083366
Coordinates   6261372..6261896 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PS1793     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6256372..6266896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLI66_RS29545 (FLI66_29515) aroB 6257488..6258594 (-) 1107 WP_019484454.1 3-dehydroquinate synthase -
  FLI66_RS29550 (FLI66_29520) aroK 6258644..6259162 (-) 519 WP_003095833.1 shikimate kinase AroK -
  FLI66_RS29555 (FLI66_29525) pilQ 6259174..6261318 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  FLI66_RS29560 (FLI66_29530) comL/pilP 6261372..6261896 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  FLI66_RS29565 (FLI66_29535) pilO 6261893..6262516 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  FLI66_RS29570 (FLI66_29540) pilN 6262513..6263109 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  FLI66_RS29575 (FLI66_29545) pilM 6263109..6264173 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  FLI66_RS29580 (FLI66_29550) - 6264358..6266829 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=531862 FLI66_RS29560 WP_003095836.1 6261372..6261896(-) (comL/pilP) [Pseudomonas aeruginosa strain PS1793]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=531862 FLI66_RS29560 WP_003095836.1 6261372..6261896(-) (comL/pilP) [Pseudomonas aeruginosa strain PS1793]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362