Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DI291_RS17095 Genome accession   NZ_CP068988
Coordinates   3379325..3379963 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3374325..3384963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS17060 (DI291_17570) - 3375516..3375947 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  DI291_RS17065 (DI291_17575) - 3375947..3376288 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  DI291_RS17070 (DI291_17580) - 3376281..3377759 (+) 1479 WP_023856152.1 Na+/H+ antiporter subunit D -
  DI291_RS17075 (DI291_17585) - 3377765..3378241 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  DI291_RS17080 (DI291_17590) - 3378241..3378525 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  DI291_RS17085 (DI291_17595) mnhG 3378509..3378883 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  DI291_RS17090 (DI291_17600) - 3378919..3379308 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  DI291_RS17095 (DI291_17605) comA 3379325..3379963 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  DI291_RS17100 (DI291_17610) comP 3380050..3382362 (-) 2313 WP_128823062.1 ATP-binding protein Regulator
  DI291_RS17105 (DI291_0685) comX 3382374..3382547 (-) 174 WP_080131484.1 competence pheromone ComX -
  DI291_RS17110 (DI291_17620) - 3382551..3383432 (-) 882 WP_128823060.1 polyprenyl synthetase family protein -
  DI291_RS17115 (DI291_17625) degQ 3383619..3383759 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  DI291_RS17120 (DI291_17635) - 3384245..3384592 (+) 348 WP_224146417.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=531863 DI291_RS17095 WP_003184849.1 3379325..3379963(-) (comA) [Bacillus paralicheniformis strain SUBG0010]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=531863 DI291_RS17095 WP_003184849.1 3379325..3379963(-) (comA) [Bacillus paralicheniformis strain SUBG0010]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778