Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   K9C16_RS16220 Genome accession   NZ_CP082952
Coordinates   3366189..3366599 (-) Length   136 a.a.
NCBI ID   WP_001978433.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Cl300     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3361189..3371599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9C16_RS16190 (K9C16_16120) - 3361275..3361544 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  K9C16_RS16195 (K9C16_16125) rapZ 3361541..3362392 (-) 852 WP_000821671.1 RNase adapter RapZ -
  K9C16_RS16200 (K9C16_16130) panC 3362415..3363263 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  K9C16_RS16205 (K9C16_16135) panB 3363267..3364076 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  K9C16_RS16210 (K9C16_16140) folK 3364122..3364604 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K9C16_RS16215 (K9C16_16145) pcnB 3364601..3366064 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  K9C16_RS16220 (K9C16_16150) comEA 3366189..3366599 (-) 411 WP_001978433.1 ComEA family DNA-binding protein Machinery gene
  K9C16_RS16225 (K9C16_16155) mazG 3366568..3367374 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  K9C16_RS16230 (K9C16_16160) - 3367486..3368259 (+) 774 WP_029423654.1 SDR family oxidoreductase -
  K9C16_RS16235 (K9C16_16165) - 3368304..3370610 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15687.00 Da        Isoelectric Point: 10.4475

>NTDB_id=531034 K9C16_RS16220 WP_001978433.1 3366189..3366599(-) (comEA) [Acinetobacter baumannii strain Cl300]
MQYSMRFWKNKYFLLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=531034 K9C16_RS16220 WP_001978433.1 3366189..3366599(-) (comEA) [Acinetobacter baumannii strain Cl300]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAGTGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412