Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   JMJ48_RS02315 Genome accession   NZ_CP068761
Coordinates   451115..451726 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 20181204     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446115..456726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ48_RS02290 (JMJ48_02290) - 446549..447130 (-) 582 WP_033910016.1 superoxide dismutase -
  JMJ48_RS02295 (JMJ48_02295) dnaB 447294..448700 (+) 1407 WP_202838326.1 replicative DNA helicase -
  JMJ48_RS02300 (JMJ48_02300) pilH 448854..449519 (+) 666 WP_202838327.1 GspH/FimT family pseudopilin Machinery gene
  JMJ48_RS02305 (JMJ48_02305) pilI 449551..450162 (+) 612 WP_202838328.1 type IV pilus modification protein PilV Machinery gene
  JMJ48_RS02310 (JMJ48_02310) pilJ 450159..451136 (+) 978 WP_202838329.1 PilW family protein Machinery gene
  JMJ48_RS02315 (JMJ48_02315) pilK 451115..451726 (+) 612 WP_003687918.1 pilus assembly PilX family protein Machinery gene
  JMJ48_RS02320 (JMJ48_02320) pilL 451728..452201 (+) 474 WP_202838364.1 PilX family type IV pilin Machinery gene
  JMJ48_RS02325 (JMJ48_02325) - 452271..452579 (-) 309 WP_050161303.1 AzlD family protein -
  JMJ48_RS02330 (JMJ48_02330) - 452576..453286 (-) 711 Protein_458 AzlC family ABC transporter permease -
  JMJ48_RS02335 (JMJ48_02335) dut 453452..453904 (+) 453 WP_003702446.1 dUTP diphosphatase -
  JMJ48_RS02340 (JMJ48_02340) dapC 453982..455169 (+) 1188 WP_202838330.1 succinyldiaminopimelate transaminase -
  JMJ48_RS02345 (JMJ48_02345) yaaA 455325..456104 (+) 780 WP_050169412.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=530792 JMJ48_RS02315 WP_003687918.1 451115..451726(+) (pilK) [Neisseria gonorrhoeae strain 20181204]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=530792 JMJ48_RS02315 WP_003687918.1 451115..451726(+) (pilK) [Neisseria gonorrhoeae strain 20181204]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1