Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   JMJ48_RS02300 Genome accession   NZ_CP068761
Coordinates   448854..449519 (+) Length   221 a.a.
NCBI ID   WP_202838327.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 20181204     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443854..454519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ48_RS02275 (JMJ48_02275) cysT 444143..444970 (-) 828 WP_202838325.1 sulfate ABC transporter permease subunit CysT -
  JMJ48_RS02280 (JMJ48_02280) - 445151..445483 (+) 333 WP_047926879.1 hypothetical protein -
  JMJ48_RS02285 (JMJ48_02285) - 445810..446319 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  JMJ48_RS02290 (JMJ48_02290) - 446549..447130 (-) 582 WP_033910016.1 superoxide dismutase -
  JMJ48_RS02295 (JMJ48_02295) dnaB 447294..448700 (+) 1407 WP_202838326.1 replicative DNA helicase -
  JMJ48_RS02300 (JMJ48_02300) pilH 448854..449519 (+) 666 WP_202838327.1 GspH/FimT family pseudopilin Machinery gene
  JMJ48_RS02305 (JMJ48_02305) pilI 449551..450162 (+) 612 WP_202838328.1 type IV pilus modification protein PilV Machinery gene
  JMJ48_RS02310 (JMJ48_02310) pilJ 450159..451136 (+) 978 WP_202838329.1 PilW family protein Machinery gene
  JMJ48_RS02315 (JMJ48_02315) pilK 451115..451726 (+) 612 WP_003687918.1 pilus assembly PilX family protein Machinery gene
  JMJ48_RS02320 (JMJ48_02320) pilL 451728..452201 (+) 474 WP_202838364.1 PilX family type IV pilin Machinery gene
  JMJ48_RS02325 (JMJ48_02325) - 452271..452579 (-) 309 WP_050161303.1 AzlD family protein -
  JMJ48_RS02330 (JMJ48_02330) - 452576..453286 (-) 711 Protein_458 AzlC family ABC transporter permease -
  JMJ48_RS02335 (JMJ48_02335) dut 453452..453904 (+) 453 WP_003702446.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24587.08 Da        Isoelectric Point: 9.5373

>NTDB_id=530789 JMJ48_RS02300 WP_202838327.1 448854..449519(+) (pilH) [Neisseria gonorrhoeae strain 20181204]
MCTRKQQGFTLTELLIVIAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYIYPTQVKKDGTGN
NRCDLGKKEQGMLAFGDKNGNKAYDGDAADVFLRSVVLNDDIKDKRIDYTFNHIAFGQTRPTADRVVWTFNQNGTFGYLS
DQNLKNDSKFVYSDGYIQIVLTDAKAVSVDEKKFRSAVVLINSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=530789 JMJ48_RS02300 WP_202838327.1 448854..449519(+) (pilH) [Neisseria gonorrhoeae strain 20181204]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATAGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTATCCTACCCAAGTTAAAAAAGACGGTACGGGCAAC
AACCGATGCGACCTCGGTAAGAAAGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGCAGCGTGGTATTGAATGATGATATCAAGGATAAGCGGATTGATTACACTTTCAATCATA
TCGCTTTCGGTCAAACACGGCCGACTGCCGATCGTGTTGTTTGGACTTTTAACCAAAACGGGACATTCGGCTATTTGTCC
GATCAGAATCTCAAGAATGATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869