Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   JMJ48_RS02310 Genome accession   NZ_CP068761
Coordinates   450159..451136 (+) Length   325 a.a.
NCBI ID   WP_202838329.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 20181204     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 445159..456136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ48_RS02285 (JMJ48_02285) - 445810..446319 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  JMJ48_RS02290 (JMJ48_02290) - 446549..447130 (-) 582 WP_033910016.1 superoxide dismutase -
  JMJ48_RS02295 (JMJ48_02295) dnaB 447294..448700 (+) 1407 WP_202838326.1 replicative DNA helicase -
  JMJ48_RS02300 (JMJ48_02300) pilH 448854..449519 (+) 666 WP_202838327.1 GspH/FimT family pseudopilin Machinery gene
  JMJ48_RS02305 (JMJ48_02305) pilI 449551..450162 (+) 612 WP_202838328.1 type IV pilus modification protein PilV Machinery gene
  JMJ48_RS02310 (JMJ48_02310) pilJ 450159..451136 (+) 978 WP_202838329.1 PilW family protein Machinery gene
  JMJ48_RS02315 (JMJ48_02315) pilK 451115..451726 (+) 612 WP_003687918.1 pilus assembly PilX family protein Machinery gene
  JMJ48_RS02320 (JMJ48_02320) pilL 451728..452201 (+) 474 WP_202838364.1 PilX family type IV pilin Machinery gene
  JMJ48_RS02325 (JMJ48_02325) - 452271..452579 (-) 309 WP_050161303.1 AzlD family protein -
  JMJ48_RS02330 (JMJ48_02330) - 452576..453286 (-) 711 Protein_458 AzlC family ABC transporter permease -
  JMJ48_RS02335 (JMJ48_02335) dut 453452..453904 (+) 453 WP_003702446.1 dUTP diphosphatase -
  JMJ48_RS02340 (JMJ48_02340) dapC 453982..455169 (+) 1188 WP_202838330.1 succinyldiaminopimelate transaminase -
  JMJ48_RS02345 (JMJ48_02345) yaaA 455325..456104 (+) 780 WP_050169412.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 325 a.a.        Molecular weight: 35722.76 Da        Isoelectric Point: 9.5019

>NTDB_id=530791 JMJ48_RS02310 WP_202838329.1 450159..451136(+) (pilJ) [Neisseria gonorrhoeae strain 20181204]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQSNPAKPGAKQENPLFSLKRSGMDKQLIPVAESADIKYPGFFQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEARSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLVK
KVKRMDVRYIYVSDCPEDEDAGKEEKFRYTNKFDKSKNAVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVC
ANRTL

Nucleotide


Download         Length: 978 bp        

>NTDB_id=530791 JMJ48_RS02310 WP_202838329.1 450159..451136(+) (pilJ) [Neisseria gonorrhoeae strain 20181204]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCCTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCGCAG
ATATTAAATATCCGGGTTTTTTCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAGGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAA
AAGGTTAAACGTATGGATGTGCGGTATATTTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAAAAATT
CAGATATACGAATAAATTCGACAAATCCAAAAATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTA
ATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGC
GCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

77.134

100

0.778