Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JMB28_RS13065 Genome accession   NZ_CP068712
Coordinates   2744672..2745187 (-) Length   171 a.a.
NCBI ID   WP_039069219.1    Uniprot ID   A0A418IFQ1
Organism   Staphylococcus shinii strain 14AME19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2739672..2750187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMB28_RS13065 (JMB28_13065) ssbA 2744672..2745187 (-) 516 WP_039069219.1 single-stranded DNA-binding protein Machinery gene
  JMB28_RS13070 (JMB28_13070) rpsF 2745206..2745511 (-) 306 WP_017723387.1 30S ribosomal protein S6 -
  JMB28_RS13075 (JMB28_13075) - 2745914..2746720 (+) 807 WP_069792967.1 GH25 family lysozyme -
  JMB28_RS13080 (JMB28_13080) ychF 2746869..2747966 (-) 1098 WP_069792968.1 redox-regulated ATPase YchF -
  JMB28_RS13085 (JMB28_13085) - 2747966..2748181 (-) 216 WP_017723390.1 DUF951 domain-containing protein -
  JMB28_RS13090 (JMB28_13090) - 2748203..2749087 (-) 885 WP_039069215.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19089.61 Da        Isoelectric Point: 4.9056

>NTDB_id=530619 JMB28_RS13065 WP_039069219.1 2744672..2745187(-) (ssbA) [Staphylococcus shinii strain 14AME19]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNNTSNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=530619 JMB28_RS13065 WP_039069219.1 2744672..2745187(-) (ssbA) [Staphylococcus shinii strain 14AME19]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGACTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTTAATAACTACTTATTCAAGGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGACGTCGTATTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCAAAAAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAACAATAATAACAACAATAATACATCGAATAATAATCAATCAGATAATCCATTTGCAAATGCAAACGGA
CCAATTGATATTAGTGATGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418IFQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.632
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.591
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

64.327

0.374