Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JM964_RS08420 Genome accession   NZ_CP068708
Coordinates   1715876..1716370 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain ID33329     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1710876..1721370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS08405 (JM964_08405) - 1713616..1714560 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  JM964_RS08410 (JM964_08410) - 1714576..1715232 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  JM964_RS08415 (JM964_08415) rpsR 1715604..1715843 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  JM964_RS08420 (JM964_08420) ssbA 1715876..1716370 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  JM964_RS08425 (JM964_08425) rpsF 1716382..1716672 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  JM964_RS08430 (JM964_08430) - 1716844..1717833 (-) 990 WP_044670065.1 lipoate--protein ligase -
  JM964_RS08435 (JM964_08435) - 1717916..1719355 (-) 1440 WP_044680930.1 6-phospho-beta-glucosidase -
  JM964_RS08440 (JM964_08440) - 1719352..1719969 (-) 618 WP_024401083.1 histidine phosphatase family protein -
  JM964_RS08445 (JM964_08445) - 1719981..1720583 (-) 603 WP_024401082.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=530565 JM964_RS08420 WP_002942409.1 1715876..1716370(-) (ssbA) [Streptococcus suis strain ID33329]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=530565 JM964_RS08420 WP_002942409.1 1715876..1716370(-) (ssbA) [Streptococcus suis strain ID33329]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTACAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366