Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   K8P00_RS07375 Genome accession   NZ_CP082861
Coordinates   1451103..1454828 (-) Length   1241 a.a.
NCBI ID   WP_003821902.1    Uniprot ID   -
Organism   Eikenella corrodens strain FDAARGOS_1474     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1446103..1459828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P00_RS07325 (K8P00_07280) - 1446208..1446420 (+) 213 WP_003821897.1 DNA translocase FtsK -
  K8P00_RS07330 (K8P00_07285) - 1446464..1448758 (+) 2295 WP_003821898.1 replication endonuclease -
  K8P00_RS07335 (K8P00_07290) - 1448849..1449055 (+) 207 WP_223417304.1 DUF4224 domain-containing protein -
  K8P00_RS07340 (K8P00_07295) - 1449089..1450129 (+) 1041 WP_197696257.1 tyrosine-type recombinase/integrase -
  K8P00_RS07375 (K8P00_07330) recB 1451103..1454828 (-) 3726 WP_003821902.1 exodeoxyribonuclease V subunit beta Machinery gene
  K8P00_RS07380 (K8P00_07335) - 1455306..1456556 (+) 1251 WP_003821904.1 NAD(P)/FAD-dependent oxidoreductase -
  K8P00_RS07385 (K8P00_07340) yegQ 1456756..1458111 (+) 1356 WP_035579870.1 tRNA 5-hydroxyuridine modification protein YegQ -
  K8P00_RS07390 (K8P00_07345) imm45 1458215..1458496 (+) 282 WP_003821908.1 Imm45 family immunity protein -
  K8P00_RS07395 (K8P00_07350) - 1458532..1459821 (-) 1290 Protein_1430 ISL3-like element ISPpu12 family transposase -

Sequence

Protein


Download         Length: 1241 a.a.        Molecular weight: 139281.11 Da        Isoelectric Point: 6.1027

>NTDB_id=530565 K8P00_RS07375 WP_003821902.1 1451103..1454828(-) (recB) [Eikenella corrodens strain FDAARGOS_1474]
MQDFHVAQLPLPPQGTHLVEASAGTGKTYSIAALFTRLVVLEGWAPENILVVTFTEAATAELKNRLRARLGEVLAALQSG
ETPADEFLQHLLAEALAKQERSKLILQLQAALSGFDTAAIYTIHGFCLRVLGDYAFLCGVPFELETGPVDTAARLVAAQD
FWREHVADHPQNARIAARFGITPASVLAEFSGSLKRAFLDYRLPENRLTQIQKGLHAAWQKLQRNVEEIEAVYRRIKPQL
HGGTFNASIDTLFTELRQAAQEGLEQPVLSKPDRLLCFEENALRNRIRKNQHIEEADIAALQPLAVFGRRLAEIDDAEQE
AAIRLKLECLGYLKTRLAEDKRRSSRRDYDDLLLDVHAALSNPEHPEQAEALAQALAAKWRVALIDEFQDTDPLQYAIFH
TAFIRQGVPVFLVGDPKQAIYGFRGADIHAYLAAAADTAPEQSYTLHTNYRSHRDLVNGIGHLFAARSRPFVLPQIAYPA
VQAARAESLLSPAPEAAVAVRWINPSAEDGKLPNKDFLRELSANYCAREIAARLNQAFSGSLMIEGKDSKKNKPLHPGQI
AVLVRKHEEGEMVARALKRRGVRSVLLQQQSVFDTPEAEALHALLLFWLAPQQTEYLRFVLGGIFYGYTAQDLAELNGNE
NRLAEWITLAETAAEAWQQHGIYTALTRFARQSGLEQHLLHTRNERSFTNFRQLAEILALAAAECASPVALAQWLEMRLK
SSKKNKKSKENKNDREDKGNKEYQLRLESDEDLVKIVTMHAAKGLEYPLVFCPFVWDTSDKLVQDWNIISQSNGRNLLLA
KAQLDEEDERQLFAEDLGERLRLLYVALTRAREQLVLYAAPCSNTPENTFAYLLAEIGEDDCQAIRDDWRGLKGQALTEA
LRQAWLKRIQSAAPGQLQWLEGEPPEANYRARNEQQGSYRALVLPERPLQFIRHTSFTGLSRQTLTAEEWLPENLLADEN
PAAETERLPENERSEFLRSKNVSDELRANGQNVVQPNGQGNLWLNEAETALLAFPAGTQPGICLHSILEQTDFVHLAAEQ
AASYADILDKHGFEAEAWLPAVLEMVEAVRRVPLAENMQLADIPADSRVAEMGFVLHLHDFGLKRLRRWFARSDIGLPEN
AAAHLPQLDFHAVTGFLNGFIDLIAAGKNGRVCVIDYKSNHLGSRLADYGRAAMSAAVSEHHYYLQALIYAVATARYLKQ
RRALPEYIHVRYLFVRGLNPHGQEGLWCWDIPVSALQEWLE

Nucleotide


Download         Length: 3726 bp        

>NTDB_id=530565 K8P00_RS07375 WP_003821902.1 1451103..1454828(-) (recB) [Eikenella corrodens strain FDAARGOS_1474]
ATGCAGGATTTCCACGTTGCACAACTGCCGCTGCCGCCGCAGGGCACCCACCTTGTCGAGGCTTCCGCCGGCACGGGCAA
AACCTACAGCATTGCCGCGCTGTTCACCCGCCTGGTGGTGCTCGAAGGCTGGGCGCCGGAAAACATACTGGTGGTTACCT
TCACCGAAGCCGCCACCGCCGAGCTGAAAAACCGCCTGCGCGCCCGGCTGGGCGAAGTTTTGGCTGCCCTGCAGAGCGGG
GAGACGCCGGCCGATGAGTTTCTACAACACCTGCTGGCCGAAGCCTTGGCCAAACAAGAGCGCAGCAAACTCATCCTGCA
GCTGCAGGCCGCCCTGTCCGGCTTCGATACCGCCGCTATCTACACCATCCACGGCTTCTGCCTGCGCGTGCTGGGCGACT
ACGCCTTCTTGTGCGGCGTGCCCTTCGAGCTGGAAACCGGCCCCGTCGACACCGCCGCCCGCCTGGTGGCCGCACAGGAT
TTCTGGCGCGAACACGTGGCCGACCACCCGCAAAACGCGCGCATCGCCGCCCGCTTCGGCATCACCCCCGCCTCCGTGCT
AGCCGAATTTTCAGGTAGCCTCAAACGCGCCTTTTTGGACTACAGGCTACCTGAAAACCGCCTGACGCAAATACAGAAAG
GCCTCCATGCCGCTTGGCAGAAGCTGCAACGGAATGTGGAGGAAATCGAAGCCGTGTACCGCCGCATCAAGCCGCAGCTT
CACGGCGGCACATTCAATGCCTCCATCGACACCCTGTTTACCGAGCTCCGGCAAGCCGCACAAGAAGGTTTGGAACAACC
CGTGCTTTCCAAGCCGGACAGGCTGCTGTGTTTTGAAGAAAACGCCCTGCGCAACAGAATCCGGAAAAACCAGCATATTG
AAGAAGCCGACATCGCCGCACTGCAACCCTTGGCCGTGTTTGGCCGCCGCCTGGCCGAAATCGACGATGCCGAGCAGGAA
GCCGCCATCCGCCTCAAGCTCGAATGTTTAGGCTACCTGAAAACCCGTTTGGCCGAAGACAAACGCCGCAGCTCGCGCCG
CGACTATGATGATTTGCTGCTCGACGTGCATGCTGCCCTGTCCAACCCCGAACATCCCGAGCAAGCCGAAGCGCTTGCCC
AAGCCCTGGCTGCCAAATGGCGCGTGGCGCTCATCGACGAATTCCAAGACACCGACCCGCTGCAATACGCCATTTTCCAC
ACCGCCTTTATCCGCCAAGGCGTGCCTGTATTTTTGGTGGGCGACCCCAAACAGGCCATCTACGGCTTTCGCGGTGCCGA
CATCCATGCCTACCTCGCCGCTGCCGCCGATACCGCCCCCGAGCAAAGCTATACCCTGCACACCAACTACCGCAGCCACC
GCGATTTGGTAAACGGCATCGGCCATCTGTTTGCCGCCCGCAGCCGCCCTTTCGTGCTGCCGCAGATTGCCTACCCCGCC
GTGCAGGCCGCCCGCGCCGAGAGCCTGCTCAGCCCTGCGCCCGAAGCCGCCGTGGCCGTGCGCTGGATCAATCCATCTGC
CGAAGATGGCAAACTGCCGAATAAAGATTTCTTGCGCGAACTTTCTGCTAACTATTGTGCCCGCGAAATTGCTGCAAGAT
TAAACCAAGCTTTTTCAGGTAGTCTCATGATTGAGGGTAAAGATAGTAAAAAAAACAAACCGTTACATCCCGGCCAAATT
GCTGTGTTGGTACGTAAACACGAAGAAGGAGAAATGGTCGCGCGCGCGCTCAAACGTCGGGGCGTGCGCAGCGTATTGCT
ACAACAGCAATCGGTGTTCGACACGCCCGAAGCCGAAGCCCTGCACGCCCTGTTGCTGTTTTGGCTGGCCCCGCAGCAAA
CCGAATACCTGCGTTTCGTGCTTGGTGGCATTTTCTATGGCTACACCGCGCAAGACCTGGCCGAATTGAACGGCAACGAA
AACCGCCTGGCCGAGTGGATAACCCTGGCCGAAACCGCCGCTGAAGCCTGGCAGCAGCACGGCATCTACACCGCGCTCAC
CCGCTTTGCCCGCCAAAGCGGCCTCGAGCAGCATCTTCTGCACACCCGCAACGAACGCAGTTTCACCAACTTCCGGCAGC
TGGCCGAAATCTTGGCGCTGGCCGCTGCTGAATGTGCCAGCCCAGTCGCATTGGCGCAATGGTTGGAAATGCGGCTGAAA
AGTAGCAAGAAAAACAAGAAAAGCAAAGAAAATAAAAATGATAGGGAGGATAAGGGAAATAAAGAATACCAGCTGCGGCT
GGAAAGCGATGAAGACTTGGTGAAAATCGTTACCATGCACGCCGCCAAAGGGCTGGAGTACCCGCTGGTGTTTTGTCCTT
TCGTGTGGGATACCAGCGACAAATTGGTGCAAGATTGGAACATCATCAGCCAAAGCAACGGCCGCAACCTGTTGTTGGCG
AAAGCCCAGCTGGACGAAGAAGACGAGCGGCAGCTGTTTGCAGAAGACCTCGGCGAACGCCTGCGCCTGCTGTATGTCGC
GCTCACCCGCGCCCGCGAGCAGCTCGTGCTCTACGCCGCCCCCTGCAGCAACACCCCGGAAAACACCTTCGCCTATCTCT
TGGCCGAAATAGGCGAAGATGACTGCCAAGCCATCCGTGATGATTGGCGCGGCCTGAAAGGCCAAGCCCTGACCGAAGCC
CTGCGACAGGCTTGGCTTAAGCGCATCCAAAGTGCCGCGCCCGGCCAGTTGCAATGGTTGGAAGGCGAGCCGCCCGAAGC
CAATTACCGCGCCCGCAACGAACAGCAGGGCAGTTACCGCGCCCTTGTGCTGCCCGAGCGGCCGCTGCAATTTATCCGCC
ACACTAGCTTTACCGGCCTGAGCCGCCAAACCCTGACCGCCGAAGAGTGGCTACCTGAAAACCTGTTGGCCGATGAAAAC
CCCGCTGCCGAAACAGAGAGGCTACCTGAAAACGAGCGCAGCGAGTTTCTGCGAAGCAAAAATGTAAGCGACGAGTTGCG
GGCCAACGGCCAAAATGTAGTTCAGCCAAACGGGCAGGGCAACTTGTGGTTAAATGAGGCCGAAACTGCCTTACTAGCTT
TCCCTGCTGGTACCCAGCCCGGTATCTGCCTGCACAGCATTTTGGAACAAACCGATTTTGTCCACCTCGCTGCCGAACAA
GCGGCATCCTATGCCGATATCTTGGACAAACACGGCTTCGAGGCTGAAGCATGGTTACCGGCGGTGTTGGAAATGGTAGA
GGCCGTGCGCCGTGTGCCGTTGGCAGAGAATATGCAGTTGGCCGATATTCCCGCCGATAGCCGCGTGGCGGAAATGGGCT
TCGTGCTGCACCTGCACGATTTCGGTTTGAAACGTCTGCGCCGCTGGTTTGCCCGCTCCGACATCGGGCTACCTGAAAAC
GCCGCCGCCCACCTGCCGCAGCTGGATTTCCACGCTGTAACTGGTTTCCTCAACGGCTTCATCGACCTGATTGCCGCAGG
CAAAAACGGCAGGGTATGCGTTATCGACTATAAATCCAATCACTTGGGCAGCCGTTTGGCCGATTACGGCCGAGCCGCCA
TGAGCGCGGCGGTGAGCGAACACCATTATTACCTGCAAGCGCTGATTTACGCCGTAGCCACCGCACGCTACCTGAAACAA
CGCCGAGCCCTGCCCGAATACATCCATGTGCGTTACCTGTTTGTGCGCGGCTTAAATCCGCATGGCCAGGAGGGCTTGTG
GTGCTGGGACATCCCCGTTTCCGCTCTGCAGGAATGGCTTGAATAG

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1033-1210)

UvrD-like helicase C-terminal domain (UvrD_C)

(444-837)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria meningitidis MC58

47.498

100

0.482
  recB Neisseria gonorrhoeae strain FA1090

46.932

100

0.475
  recB Neisseria gonorrhoeae MS11

46.932

100

0.475