Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLUC073_RS09100 Genome accession   NZ_CP068698
Coordinates   1768213..1768554 (-) Length   113 a.a.
NCBI ID   WP_282671604.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC073     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1763519..1768177 1768213..1768554 flank 36


Gene organization within MGE regions


Location: 1763519..1768554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC073_RS09075 (LLUC073_14060) comEC 1764450..1764959 (-) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  LLUC073_RS09080 (LLUC073_14065) - 1765053..1765424 (-) 372 Protein_1767 ComEC/Rec2 family competence protein -
  LLUC073_RS09085 (LLUC073_08865) - 1765416..1766591 (+) 1176 WP_120784980.1 IS256-like element IS905 family transposase -
  LLUC073_RS09090 (LLUC073_08870) comEC 1766638..1767090 (-) 453 WP_405029274.1 ComEC/Rec2 family competence protein Machinery gene
  LLUC073_RS09095 (LLUC073_08875) - 1767323..1768212 (+) 890 Protein_1770 IS982-like element IS982B family transposase -
  LLUC073_RS09100 (LLUC073_08880) comEC 1768213..1768554 (-) 342 WP_282671604.1 ComEC/Rec2 family competence protein Machinery gene

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12983.81 Da        Isoelectric Point: 6.2661

>NTDB_id=530476 LLUC073_RS09100 WP_282671604.1 1768213..1768554(-) (comEC) [Lactococcus cremoris strain UC073]
MIPILIVFAVFFLLINSLSIRDNENQPKNLSKIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNC
QLSFTGNLEIPETQRNFNGFDDQKYLTSTRIAS

Nucleotide


Download         Length: 342 bp        

>NTDB_id=530476 LLUC073_RS09100 WP_282671604.1 1768213..1768554(-) (comEC) [Lactococcus cremoris strain UC073]
ATGATTCCGATATTAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACC
AAAAAATCTCTCAAAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGA
ATGGACAAAAATATCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGT
CAGTTAAGTTTCACAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAAC
TAGTACCCGAATTGCTAGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

92.793

98.23

0.912
  comEC/celB Streptococcus pneumoniae TIGR4

39.048

92.92

0.363
  comEC/celB Streptococcus mitis SK321

39.048

92.92

0.363